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3VPT
Biol. Unit 1
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Asym.Unit (79 KB)
Biol.Unit 1 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN APO FORM
Authors
:
K. Yamamoto, A. Higashiura, M. Suzuki, A. Nakagawa
Date
:
13 Mar 12 (Deposition) - 06 Mar 13 (Release) - 31 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Gsh Binding, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Yamamoto, A. Higashiura, M. Suzuki, K. Aritake, Y. Urade, N. Uodome A. Nakagawa
Crystal Structure Of A Bombyx Mori Sigma-Class Glutathione Transferase Exhibiting Prostaglandin E Synthase Activity
Biochim. Biophys. Acta V. 1830 3711 2013
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
1b: DI(HYDROXYETHYL)ETHER (PEGb)
1c: DI(HYDROXYETHYL)ETHER (PEGc)
1d: DI(HYDROXYETHYL)ETHER (PEGd)
2a: TETRAETHYLENE GLYCOL (PG4a)
3a: S-1,2-PROPANEDIOL (PGOa)
3b: S-1,2-PROPANEDIOL (PGOb)
3c: S-1,2-PROPANEDIOL (PGOc)
3d: S-1,2-PROPANEDIOL (PGOd)
3e: S-1,2-PROPANEDIOL (PGOe)
3f: S-1,2-PROPANEDIOL (PGOf)
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No.
Name
Count
Type
Full Name
1
PEG
8
Ligand/Ion
DI(HYDROXYETHYL)ETHER
2
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGO
12
Ligand/Ion
S-1,2-PROPANEDIOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:43 , THR A:45 , PRO A:46 , PHE A:47 , GLY A:48 , LYS A:131
BINDING SITE FOR RESIDUE PGO A 301
02
AC2
SOFTWARE
LYS A:11 , ALA A:156
BINDING SITE FOR RESIDUE PGO A 302
03
AC3
SOFTWARE
TYR A:6 , LYS A:44 , GLU A:54 , GLN A:59
BINDING SITE FOR RESIDUE PGO A 303
04
AC4
SOFTWARE
ARG A:72 , ASP A:81
BINDING SITE FOR RESIDUE PGO A 304
05
AC5
SOFTWARE
GLU A:122 , THR A:123 , GLU A:130 , LYS A:174 , TYR A:175
BINDING SITE FOR RESIDUE PEG A 305
06
AC6
SOFTWARE
LYS A:180
BINDING SITE FOR RESIDUE PEG A 306
07
AC7
SOFTWARE
GLU A:86 , ASN A:90 , GLU A:134 , LYS A:138 , ASN A:139 , ARG A:200
BINDING SITE FOR RESIDUE PEG A 307
08
AC8
SOFTWARE
GLY A:75 , LEU A:76 , ALA A:77 , GLY A:78 , LEU A:148 , GLU A:172
BINDING SITE FOR RESIDUE PGO A 308
09
AC9
SOFTWARE
THR A:64 , ASN A:95 , ARG A:98 , HOH A:436 , HOH A:449
BINDING SITE FOR RESIDUE PGO A 309
10
BC1
SOFTWARE
GLN A:49 , SER A:100 , LYS A:124
BINDING SITE FOR RESIDUE PG4 A 310
11
BC2
SOFTWARE
PRO A:9 , VAL A:10 , ASN A:140
BINDING SITE FOR RESIDUE PEG A 311
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3vpta2 (A:76-203)
2a: SCOP_d3vpta1 (A:1-75)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Silkworm (Bombyx mori) [TaxId: 7091]
(7)
1a
d3vpta2
A:76-203
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Silkworm (Bombyx mori) [TaxId: 7091]
(7)
2a
d3vpta1
A:1-75
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (79 KB)
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Header - Biol.Unit 1
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