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3VLW
Biol. Unit 2
Info
Asym.Unit (182 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PROTEIN ALGQ1 IN COMPLEX WITH MANNURONATE-GULURONATE DISACCHARIDE
Authors
:
Y. Nishitani, Y. Maruyama, T. Itoh, B. Mikami, W. Hashimoto, K. Murata
Date
:
05 Dec 11 (Deposition) - 25 Jan 12 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sugar Binding Protein, Alginate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nishitani, Y. Maruyama, T. Itoh, B. Mikami, W. Hashimoto, K. Murata
Recognition Of Heteropolysaccharide Alginate By Periplasmic Solute-Binding Proteins Of A Bacterial Abc Transporter
Biochemistry V. 51 3622 2012
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: BETA-D-MANNURONIC ACID (BEMa)
1b: BETA-D-MANNURONIC ACID (BEMb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
4a: ALPHA-L-GULURONATE (LGUa)
4b: ALPHA-L-GULURONATE (LGUb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BEM
1
Ligand/Ion
BETA-D-MANNURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
11
Ligand/Ion
GLYCEROL
4
LGU
1
Ligand/Ion
ALPHA-L-GULURONATE
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Sites
(15, 15)
Info
All Sites
01: AC5 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ILE A:356 , LYS A:357 , ASN A:358 , GLY A:359 , LYS B:168 , LYS B:239 , GLU B:240
BINDING SITE FOR RESIDUE GOL A 507
02
BC2
SOFTWARE
ASP B:171 , ASN B:173 , ASN B:175 , LYS B:177 , ASP B:179 , GLU B:180
BINDING SITE FOR RESIDUE CA B 503
03
BC3
SOFTWARE
ARG B:186 , TRP B:270 , ALA B:272 , SER B:273 , ASN B:375 , GLN B:391 , TYR B:395 , GLU B:396 , TRP B:399 , LGU B:505 , HOH B:641 , HOH B:696
BINDING SITE FOR RESIDUE BEM B 504
04
BC4
SOFTWARE
ARG B:20 , TYR B:129 , ARG B:186 , TRP B:270 , TYR B:379 , BEM B:504 , GOL B:509 , GOL B:515 , HOH B:603 , HOH B:695 , HOH B:696 , HOH B:698 , HOH B:704
BINDING SITE FOR RESIDUE LGU B 505
05
BC5
SOFTWARE
ASP B:78 , TRP B:208 , MET B:209 , ASP B:210 , TYR B:434 , TRP B:438 , LYS B:442 , HOH B:640
BINDING SITE FOR RESIDUE GOL B 506
06
BC6
SOFTWARE
GLY B:133 , LEU B:134 , VAL B:135 , ARG B:309 , TYR B:393 , ILE B:412 , HOH B:594
BINDING SITE FOR RESIDUE GOL B 507
07
BC7
SOFTWARE
ASP B:78 , VAL B:424 , LEU B:426 , ARG B:431 , MET B:482 , HOH B:640
BINDING SITE FOR RESIDUE GOL B 508
08
BC8
SOFTWARE
LYS B:22 , ARG B:186 , ALA B:252 , LGU B:505
BINDING SITE FOR RESIDUE GOL B 509
09
BC9
SOFTWARE
GLN B:420 , PHE B:421 , THR B:422 , GLY B:423 , TYR B:486 , TYR B:490 , HOH B:597
BINDING SITE FOR RESIDUE GOL B 510
10
CC1
SOFTWARE
GLU B:189 , LYS B:251 , PHE B:446 , HOH B:567
BINDING SITE FOR RESIDUE GOL B 511
11
CC2
SOFTWARE
ARG B:33 , ALA B:36 , ARG B:37 , HOH B:719
BINDING SITE FOR RESIDUE GOL B 512
12
CC3
SOFTWARE
ALA B:223 , GLU B:224 , VAL B:225 , TYR B:476 , HOH B:521
BINDING SITE FOR RESIDUE GOL B 513
13
CC4
SOFTWARE
LYS B:232 , HIS B:233 , GLN B:236
BINDING SITE FOR RESIDUE GOL B 514
14
CC5
SOFTWARE
ARG B:20 , ASP B:74 , ASN B:75 , ARG B:313 , ASP B:315 , LGU B:505 , HOH B:575 , HOH B:603
BINDING SITE FOR RESIDUE GOL B 515
15
CC6
SOFTWARE
ALA A:3 , GLU B:447 , GLN B:450 , SER B:451 , THR B:456
BINDING SITE FOR RESIDUE GOL B 516
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vlwa_ (A:)
1b: SCOP_d3vlwb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Sphingomonas sp. [TaxId: 90322]
(5)
1a
d3vlwa_
A:
1b
d3vlwb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (182 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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