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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
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Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
STRUCTURE OF PCNA
Authors
:
H. Hashimoto, A. Hishiki, T. Shimizu, M. Sato, C. Punchihewa, M. Connel M. Actis, B. Waddell, V. Pagala, N. Fujii
Date
:
26 Nov 11 (Deposition) - 14 Mar 12 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Nuclei, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Punchihewa, A. Inoue, A. Hishiki, Y. Fujikawa, M. Connelly, B. Evison, Y. Shao, R. Heath, I. Kuraoka, P. Rodrigues, H. Hashimoto, M. Kawanishi, M. Sato, T. Yagi, N. Fujii
Identification Of Small Molecule Proliferating Cell Nuclear Antigen (Pcna) Inhibitor That Disrupts Interactions With Pip-Box Proteins And Inhibits Dna Replication
J. Biol. Chem. V. 287 14289 2012
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
3a: 3,5,3'TRIIODOTHYRONINE (T3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
SO4
6
Ligand/Ion
SULFATE ION
3
T3
1
Ligand/Ion
3,5,3'TRIIODOTHYRONINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:40 , LEU A:47 , GLY A:127 , PRO A:129 , GLN A:131 , ASP A:232 , PRO A:234 , TYR A:250 , ILE A:255 , HOH A:379
BINDING SITE FOR RESIDUE T3 A 301
2
AC2
SOFTWARE
GLY A:142 , GLU A:143 , ARG A:146 , HOH A:359 , HOH A:364 , HOH A:378
BINDING SITE FOR RESIDUE SO4 A 262
3
AC3
SOFTWARE
LYS A:168 , LYS A:181 , HOH A:356
BINDING SITE FOR RESIDUE SO4 A 263
4
AC4
SOFTWARE
ARG A:53 , GLU A:238 , LYS A:240 , GLY A:245 , HIS A:246 , HOH A:357
BINDING SITE FOR RESIDUE SO4 A 264
5
AC5
SOFTWARE
ARG A:146 , ARG A:149
BINDING SITE FOR RESIDUE SO4 A 265
6
AC6
SOFTWARE
TYR A:133 , SER A:228 , VAL A:236 , GLU A:238 , LYS A:248 , TYR A:250 , HOH A:323
BINDING SITE FOR RESIDUE SO4 A 266
7
AC7
SOFTWARE
GLN A:49 , THR A:51 , HIS A:246 , HOH A:357 , HOH A:376
BINDING SITE FOR RESIDUE SO4 A 267
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071871 (S228I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
A
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:34-57)
2: PCNA_2 (A:61-79)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
1
A:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
1
A:61-79
[
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Exons
(6, 6)
Info
All Exons
Exon 1.2b (A:1-74)
Exon 1.3 (A:74-107)
Exon 1.4 (A:107-129)
Exon 1.5 (A:130-194 (gaps))
Exon 1.6 (A:195-236)
Exon 1.7 (A:236-255)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000379160
1
ENSE00001480155
chr20:
5107272-5107146
127
PCNA_HUMAN
-
0
0
-
-
1.2b
ENST00000379160
2b
ENSE00001480145
chr20:
5100560-5100224
337
PCNA_HUMAN
1-74
74
1
A:1-74
74
1.3
ENST00000379160
3
ENSE00001747465
chr20:
5099512-5099415
98
PCNA_HUMAN
74-107
34
1
A:74-107
34
1.4
ENST00000379160
4
ENSE00001693283
chr20:
5099323-5099256
68
PCNA_HUMAN
107-129
23
1
A:107-129
23
1.5
ENST00000379160
5
ENSE00000906721
chr20:
5098310-5098116
195
PCNA_HUMAN
130-194
65
1
A:130-194 (gaps)
65
1.6
ENST00000379160
6
ENSE00000906720
chr20:
5096218-5096095
124
PCNA_HUMAN
195-236
42
1
A:195-236
42
1.7
ENST00000379160
7
ENSE00000906719
chr20:
5096008-5095599
410
PCNA_HUMAN
236-261
26
1
A:236-255
20
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vkxa1 (A:1-126)
1b: SCOP_d3vkxa2 (A:127-255)
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Protein Domains
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3vkxa1
A:1-126
1b
d3vkxa2
A:127-255
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (92 KB)
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Header - Biol.Unit 1
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