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3VKG
Biol. Unit 1
Info
Asym.Unit (920 KB)
Biol.Unit 1 (905 KB)
Biol.Unit 2 (467 KB)
Biol.Unit 3 (454 KB)
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(1)
Title
:
X-RAY STRUCTURE OF AN MTBD TRUNCATION MUTANT OF DYNEIN MOTOR DOMAIN
Authors
:
T. Kon, T. Oyama, R. Shimo-Kon, K. Suto, G. Kurisu
Date
:
16 Nov 11 (Deposition) - 14 Mar 12 (Release) - 07 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Aaa+ Protein, Molecular Motor, Microtubles, Motor Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Kon, T. Oyama, R. Shimo-Kon, K. Imamula, T. Shima, K. Sutoh, G. Kuris
The 2. 8 A Crystal Structure Of The Dynein Motor Domain
Nature V. 484 345 2012
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SPERMINE (SPMa)
3b: SPERMINE (SPMb)
3c: SPERMINE (SPMc)
3d: SPERMINE (SPMd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
8
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SPM
4
Ligand/Ion
SPERMINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:1947 , VAL A:1948 , THR A:1953 , GLY A:1977 , THR A:1978 , GLY A:1979 , LYS A:1980 , THR A:1981 , GLU A:1982 , ILE A:2108 , LEU A:2149 , ARG A:2150 , LYS A:2153
BINDING SITE FOR RESIDUE ADP A 9001
02
AC2
SOFTWARE
MG A:1 , LEU A:2249 , VAL A:2250 , TRP A:2255 , GLY A:2279 , GLY A:2280 , GLY A:2281 , LYS A:2282 , THR A:2283 , THR A:2284 , GLU A:2396 , LEU A:2421 , MET A:2425 , ASN A:2429 , ARG A:2806 , ARG A:2809
BINDING SITE FOR RESIDUE ADP A 9002
03
AC3
SOFTWARE
VAL A:2646 , VAL A:2647 , ILE A:2648 , THR A:2653 , GLY A:2677 , SER A:2678 , GLY A:2679 , LYS A:2680 , THR A:2681 , MET A:2682 , ILE A:2827 , PRO A:2876 , ARG A:2877 , SER A:2880
BINDING SITE FOR RESIDUE ADP A 9003
04
AC4
SOFTWARE
PRO A:2987 , LEU A:2988 , VAL A:2989 , PHE A:2991 , VAL A:2994 , GLY A:3019 , GLY A:3020 , GLY A:3021 , LYS A:3022 , SER A:3023 , VAL A:3024 , TRP A:3176
BINDING SITE FOR RESIDUE ADP A 9004
05
AC5
SOFTWARE
PHE A:2439 , GLU A:2666 , HIS A:2667
BINDING SITE FOR RESIDUE SPM A 9012
06
AC6
SOFTWARE
PHE A:4089 , HIS A:4090 , SER A:4091 , SER A:4420
BINDING SITE FOR RESIDUE SPM A 9016
07
AC7
SOFTWARE
THR A:2283 , GLU A:2396 , ARG A:2806 , ADP A:9002
BINDING SITE FOR RESIDUE MG A 1
08
AC8
SOFTWARE
MG B:2 , LEU B:1947 , VAL B:1948 , THR B:1953 , ALA B:1976 , GLY B:1977 , THR B:1978 , GLY B:1979 , LYS B:1980 , THR B:1981 , GLU B:1982 , ILE B:2108 , LEU B:2149 , ARG B:2150 , LYS B:2153
BINDING SITE FOR RESIDUE ADP B 9007
09
AC9
SOFTWARE
MG B:3 , VAL B:2250 , TRP B:2255 , GLY B:2279 , GLY B:2280 , GLY B:2281 , LYS B:2282 , THR B:2283 , THR B:2284 , GLU B:2396 , LEU B:2421 , MET B:2425 , ARG B:2809
BINDING SITE FOR RESIDUE ADP B 9008
10
BC1
SOFTWARE
VAL B:2646 , VAL B:2647 , ILE B:2648 , PRO B:2676 , GLY B:2677 , SER B:2678 , GLY B:2679 , LYS B:2680 , THR B:2681 , MET B:2682 , ILE B:2827 , TYR B:2828 , PRO B:2876 , ARG B:2877 , SER B:2880
BINDING SITE FOR RESIDUE ADP B 9009
11
BC2
SOFTWARE
PRO B:2987 , LEU B:2988 , VAL B:2989 , PHE B:2991 , VAL B:2994 , SER B:3018 , GLY B:3019 , GLY B:3020 , GLY B:3021 , LYS B:3022 , SER B:3023 , VAL B:3024 , TRP B:3176 , ARG B:3258 , LEU B:3261
BINDING SITE FOR RESIDUE ADP B 9010
12
BC3
SOFTWARE
TYR B:2430 , LEU B:2434 , GLU B:2437 , PRO B:2438 , PHE B:2439 , ASN B:2542 , ARG B:2668
BINDING SITE FOR RESIDUE SPM B 9018
13
BC4
SOFTWARE
LYS B:4087 , ALA B:4088 , PHE B:4089 , HIS B:4090 , SER B:4091 , SER B:4416 , SER B:4420
BINDING SITE FOR RESIDUE SPM B 9022
14
BC5
SOFTWARE
THR B:1981 , ASP B:2026 , ADP B:9007
BINDING SITE FOR RESIDUE MG B 2
15
BC6
SOFTWARE
THR B:2283 , GLU B:2396 , GLU B:2768 , ADP B:9008
BINDING SITE FOR RESIDUE MG B 3
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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Asym.Unit (920 KB)
Header - Asym.Unit
Biol.Unit 1 (905 KB)
Header - Biol.Unit 1
Biol.Unit 2 (467 KB)
Header - Biol.Unit 2
Biol.Unit 3 (454 KB)
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