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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3VHU
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
MINERALOCORTICOID RECEPTOR LIGAND-BINDING DOMAIN WITH SPIRONOLACTONE
Authors
:
S. Sogabe, N. Habuka
Date
:
07 Sep 11 (Deposition) - 28 Dec 11 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nuclear Receptor, Transcription Factor, Activating Mutation, Hypertension, Antagonist, Spironolactone, Transcription-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hasui, N. Matsunaga, T. Ora, N. Ohyabu, N. Nishigaki, Y. Imura, Y. Igata, H. Matsui, T. Motoyaji, T. Tanaka, N. Habuka, S. Sogabe, M. Ono, C. S. Siedem, T. P. Tang, C. Gauthier, L. A. De Meese, S. A. Boyd, S. Fukumoto
Identification Of Benzoxazin-3-One Derivatives As Novel, Potent, And Selective Nonsteroidal Mineralocorticoid Receptor Antagonists
J. Med. Chem. V. 54 8616 2011
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SPIRONOLACTONE (SNLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SNL
1
Ligand/Ion
SPIRONOLACTONE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:766 , LEU A:769 , ASN A:770 , ALA A:773 , GLN A:776 , MET A:807 , LEU A:810 , ARG A:817 , PHE A:829 , MET A:845 , MET A:852 , LEU A:938 , PHE A:941 , CYS A:942 , THR A:945 , PHE A:956
BINDING SITE FOR RESIDUE SNL A 1001
[
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]
SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_031271 (P759S, chain A, )
02: VAR_031272 (L769P, chain A, )
03: VAR_031273 (N770K, chain A, )
04: VAR_031274 (Q776R, chain A, )
05: VAR_031275 (S805P, chain A, )
06: VAR_015626 (L810L, chain A, )
07: VAR_031276 (S815R, chain A, )
08: VAR_031277 (S818L, chain A, )
09: VAR_029311 (F826Y, chain A, )
10: VAR_015627 (L924P, chain A, )
11: VAR_031278 (E972G, chain A, )
12: VAR_031279 (L979P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_031271
P
759
S
MCR_HUMAN
Disease (PHA1A)
---
A
P
759
S
02
UniProt
VAR_031272
L
769
P
MCR_HUMAN
Disease (PHA1A)
---
A
L
769
P
03
UniProt
VAR_031273
N
770
K
MCR_HUMAN
Disease (PHA1A)
---
A
N
770
K
04
UniProt
VAR_031274
Q
776
R
MCR_HUMAN
Disease (PHA1A)
---
A
Q
776
R
05
UniProt
VAR_031275
S
805
P
MCR_HUMAN
Disease (PHA1A)
---
A
S
805
P
06
UniProt
VAR_015626
S
810
L
MCR_HUMAN
Disease (EOHSEP)
41511344
A
L
810
L
07
UniProt
VAR_031276
S
815
R
MCR_HUMAN
Disease (PHA1A)
---
A
S
815
R
08
UniProt
VAR_031277
S
818
L
MCR_HUMAN
Disease (PHA1A)
---
A
S
818
L
09
UniProt
VAR_029311
F
826
Y
MCR_HUMAN
Polymorphism
13306592
A
F
826
Y
10
UniProt
VAR_015627
L
924
P
MCR_HUMAN
Disease (PHA1A)
---
A
L
924
P
11
UniProt
VAR_031278
E
972
G
MCR_HUMAN
Disease (PHA1A)
---
A
E
972
G
12
UniProt
VAR_031279
L
979
P
MCR_HUMAN
Disease (PHA1A)
---
A
L
979
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(5, 5)
Info
All Exons
Exon 1.8a (A:728-789)
Exon 1.9a (A:789-837)
Exon 1.11 (A:837-881)
Exon 1.12 (A:881-933 (gaps))
Exon 1.13f (A:934-982)
View:
Select:
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All Exon Boundaries
1: Boundary 1.7b/1.8a
2: Boundary 1.8a/1.9a
3: Boundary 1.9a/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13f
6: Boundary 1.13f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000344721
1
ENSE00002066715
chr4:
149365850-149365678
173
MCR_HUMAN
-
0
0
-
-
1.3a
ENST00000344721
3a
ENSE00001221601
chr4:
149358014-149356256
1759
MCR_HUMAN
1-586
586
0
-
-
1.5a
ENST00000344721
5a
ENSE00001221249
chr4:
149181269-149181130
140
MCR_HUMAN
586-633
48
0
-
-
1.7b
ENST00000344721
7b
ENSE00001641416
chr4:
149116013-149115897
117
MCR_HUMAN
633-672
40
0
-
-
1.8a
ENST00000344721
8a
ENSE00001221232
chr4:
149076052-149075702
351
MCR_HUMAN
672-789
118
1
A:728-789
62
1.9a
ENST00000344721
9a
ENSE00001000702
chr4:
149073764-149073620
145
MCR_HUMAN
789-837
49
1
A:789-837
49
1.11
ENST00000344721
11
ENSE00001771423
chr4:
149041439-149041309
131
MCR_HUMAN
837-881
45
1
A:837-881
45
1.12
ENST00000344721
12
ENSE00001739163
chr4:
149035412-149035255
158
MCR_HUMAN
881-933
53
1
A:881-933 (gaps)
53
1.13f
ENST00000344721
13f
ENSE00002059455
chr4:
149002650-148999913
2738
MCR_HUMAN
934-984
51
1
A:934-982
49
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3vhua_ (A:)
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(
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Folds
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d3vhua_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein
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Chain A
Asymmetric Unit 1
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