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3VFL
Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (201 KB)
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(1)
Title
:
STRUCTURE, FUNCTION, STABILITY AND KNOCKOUT PHENOTYPE OF DIHYDRODIPICOLINATE SYNTHASE FROM STREPTOCOCCUS PNEUMONIAE
Authors
:
M. A. Gorman
Date
:
10 Jan 12 (Deposition) - 12 Jun 13 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lyase, Dihydrodipicolinate Synthase, Lysine Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Dogovski, M. A. Gorman, N. E. Ketaren, J. Praszkier, G. Bryant, J. Yang, M. D. W. Griffin, F. G. Pearce, S. K. Bhargava, R. C. J. Dobson, C. A. Hutton, J. A. Gerrard, R. M. Robins-Browne, G. B. Jameson, M. W. Parker, M. A. Perugini
Structure, Function, Stability And Knockout Phenotype Of Dihydrodipicolinate Synthase From Streptococcus Pneumoniae
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
K
4
Ligand/Ion
POTASSIUM ION
3
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:159 , HIS A:161 , ILE A:164
BINDING SITE FOR RESIDUE K A 401
02
AC2
SOFTWARE
SER A:54 , LEU A:57 , GLU A:62
BINDING SITE FOR RESIDUE K A 402
03
AC3
SOFTWARE
ALA A:14 , LEU A:46 , GLY A:49 , THR A:50 , THR A:51 , TYR A:140 , LYS A:168 , ILE A:209 , GOL A:404 , MES A:406 , HOH A:619 , TYR B:114
BINDING SITE FOR RESIDUE GOL A 403
04
AC4
SOFTWARE
ALA A:48 , GLY A:49 , THR A:50 , SER A:54 , GLY A:84 , LEU A:108 , ALA A:109 , ILE A:110 , GOL A:403 , TYR B:114
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
THR A:56 , ARG A:273 , LEU A:274 , LEU A:307 , ARG A:308 , ASP B:87 , THR B:88 , ARG B:89
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
TYR A:140 , ILE A:142 , ARG A:145 , GLY A:192 , GLU A:193 , PHE A:250 , GOL A:403 , HOH A:606 , HOH A:619
BINDING SITE FOR RESIDUE MES A 406
07
AC7
SOFTWARE
ALA B:159 , HIS B:161 , ILE B:164
BINDING SITE FOR RESIDUE K B 401
08
AC8
SOFTWARE
SER B:54 , LEU B:57 , GLU B:62 , HOH B:572
BINDING SITE FOR RESIDUE K B 402
09
AC9
SOFTWARE
TYR A:114 , ALA B:14 , LEU B:46 , GLY B:49 , THR B:50 , THR B:51 , LEU B:108 , TYR B:140 , LYS B:168 , MES B:404 , HOH B:528 , HOH B:542
BINDING SITE FOR RESIDUE GOL B 403
10
BC1
SOFTWARE
THR B:51 , TYR B:140 , ARG B:145 , GLU B:193 , PHE B:250 , GOL B:403 , HOH B:566 , HOH B:604
BINDING SITE FOR RESIDUE MES B 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vfla_ (A:)
1b: SCOP_d3vflb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Streptococcus pneumoniae [TaxId: 406556]
(2)
1a
d3vfla_
A:
1b
d3vflb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (108 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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