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3VF9
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPLEEN TYROSINE KINASE SYK CATALYTIC DOMAIN WITH THIENOPYRAZOLYLINDOLE INHIBITOR 027
Authors
:
L. R. Mclean, Y. Zhang
Date
:
09 Jan 12 (Deposition) - 02 May 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. R. Mclean, Y. Zhang, N. Zaidi, X. Bi, R. Wang, R. Dharanipragada, J. G. Jurcak, T. A. Gillespy, Z. Zhao, K. Y. Musick, Y. M. Choi, M. Barrague, J. Peppard, M. Smicker, M. Duguid, A. Parkar, J. Fordham, D. Kominos
X-Ray Crystallographic Structure-Based Design Of Selective Thienopyrazole Inhibitors For Interleukin-2-Inducible Tyrosine Kinase.
Bioorg. Med. Chem. Lett. V. 22 3296 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3-{2-[5-(DIFLUOROMETHYL)-2H-THIENO... (477a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
477
1
Ligand/Ion
3-{2-[5-(DIFLUOROMETHYL)-2H-THIENO[3,2-C]PYRAZOL-3-YL]-1H-INDOL-6-YL}PENTAN-3-OL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:377 , ALA A:400 , MET A:448 , GLU A:449 , MET A:450 , ALA A:451 , GLU A:452 , LEU A:453 , GLY A:454 , PRO A:455 , LEU A:501
BINDING SITE FOR RESIDUE 477 A 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:377-402)
2: PROTEIN_KINASE_TYR (A:490-502)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KSYK_HUMAN
377-402
1
A:377-402
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
KSYK_HUMAN
490-502
1
A:490-502
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Exons
(6, 6)
Info
All Exons
Exon 1.11 (A:364-393)
Exon 1.12 (A:395-464 (gaps))
Exon 1.13 (A:464-527)
Exon 1.14 (A:528-574)
Exon 1.15 (A:575-612)
Exon 1.16 (A:612-635)
View:
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All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13
4: Boundary 1.13/1.14
5: Boundary 1.14/1.15
6: Boundary 1.15/1.16
7: Boundary 1.16/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000375754
1
ENSE00001468303
chr9:
93564069-93564175
107
KSYK_HUMAN
-
0
0
-
-
1.4b
ENST00000375754
4b
ENSE00001468302
chr9:
93606140-93606597
458
KSYK_HUMAN
1-139
139
0
-
-
1.5
ENST00000375754
5
ENSE00001176524
chr9:
93607716-93607876
161
KSYK_HUMAN
140-193
54
0
-
-
1.6
ENST00000375754
6
ENSE00001176518
chr9:
93624488-93624626
139
KSYK_HUMAN
193-239
47
0
-
-
1.7
ENST00000375754
7
ENSE00001176425
chr9:
93626871-93626949
79
KSYK_HUMAN
240-266
27
0
-
-
1.8
ENST00000375754
8
ENSE00001176505
chr9:
93627330-93627379
50
KSYK_HUMAN
266-282
17
0
-
-
1.9
ENST00000375754
9
ENSE00001176494
chr9:
93629413-93629481
69
KSYK_HUMAN
283-305
23
0
-
-
1.10
ENST00000375754
10
ENSE00001176486
chr9:
93636486-93636573
88
KSYK_HUMAN
306-335
30
0
-
-
1.11
ENST00000375754
11
ENSE00001176477
chr9:
93636954-93637131
178
KSYK_HUMAN
335-394
60
1
A:364-393
30
1.12
ENST00000375754
12
ENSE00001176467
chr9:
93639853-93640062
210
KSYK_HUMAN
394-464
71
1
A:395-464 (gaps)
70
1.13
ENST00000375754
13
ENSE00001176458
chr9:
93641046-93641235
190
KSYK_HUMAN
464-527
64
1
A:464-527
64
1.14
ENST00000375754
14
ENSE00001176447
chr9:
93650031-93650171
141
KSYK_HUMAN
528-574
47
1
A:528-574
47
1.15
ENST00000375754
15
ENSE00001176435
chr9:
93650797-93650909
113
KSYK_HUMAN
575-612
38
1
A:575-612
38
1.16
ENST00000375754
16
ENSE00001468273
chr9:
93657810-93660831
3022
KSYK_HUMAN
612-635
24
1
A:612-635
24
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3vf9a_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Tyrosine-protein kinase SYK
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3vf9a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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