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3VDB
Asym. Unit
Info
Asym.Unit (746 KB)
Biol.Unit 1 (733 KB)
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(1)
Title
:
E. COLI (LACZ) BETA-GALACTOSIDASE (N460T) IN COMPLEX WITH GALACTONOLACTONE
Authors
:
R. W. Wheatley, J. C. Kappelhoff, J. N. Hahn, M. L. Dugdale, M. J. Dutkosk S. D. Tamman, M. E. Fraser, R. E. Huber
Date
:
04 Jan 12 (Deposition) - 11 Apr 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transition State Stabilization, Substrate Binding, 2-Stage Binding, Tim Barrel (Alpha/Beta Barrel), Jelly-Roll Barrel, Immunoglobulin, Beta Supersandwich, Glycosidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. W. Wheatley, J. C. Kappelhoff, J. N. Hahn, M. L. Dugdale, M. J. Dutkoski, S. D. Tamman, M. E. Fraser, R. E. Huber
Substitution For Asn460 Cripples {Beta}-Galactosidase (Escherichia Coli) By Increasing Substrate Affinity And Decreasing Transition State Stability.
Arch. Biochem. Biophys. V. 521 51 2012
[
close entry info
]
Hetero Components
(4, 104)
Info
All Hetero Components
1a: D-GALACTONOLACTONE (149a)
1b: D-GALACTONOLACTONE (149b)
1c: D-GALACTONOLACTONE (149c)
1d: D-GALACTONOLACTONE (149d)
2a: DIMETHYL SULFOXIDE (DMSa)
2aa: DIMETHYL SULFOXIDE (DMSaa)
2ab: DIMETHYL SULFOXIDE (DMSab)
2ac: DIMETHYL SULFOXIDE (DMSac)
2ad: DIMETHYL SULFOXIDE (DMSad)
2ae: DIMETHYL SULFOXIDE (DMSae)
2af: DIMETHYL SULFOXIDE (DMSaf)
2ag: DIMETHYL SULFOXIDE (DMSag)
2ah: DIMETHYL SULFOXIDE (DMSah)
2ai: DIMETHYL SULFOXIDE (DMSai)
2aj: DIMETHYL SULFOXIDE (DMSaj)
2ak: DIMETHYL SULFOXIDE (DMSak)
2al: DIMETHYL SULFOXIDE (DMSal)
2am: DIMETHYL SULFOXIDE (DMSam)
2an: DIMETHYL SULFOXIDE (DMSan)
2ao: DIMETHYL SULFOXIDE (DMSao)
2ap: DIMETHYL SULFOXIDE (DMSap)
2aq: DIMETHYL SULFOXIDE (DMSaq)
2ar: DIMETHYL SULFOXIDE (DMSar)
2as: DIMETHYL SULFOXIDE (DMSas)
2at: DIMETHYL SULFOXIDE (DMSat)
2au: DIMETHYL SULFOXIDE (DMSau)
2av: DIMETHYL SULFOXIDE (DMSav)
2aw: DIMETHYL SULFOXIDE (DMSaw)
2ax: DIMETHYL SULFOXIDE (DMSax)
2ay: DIMETHYL SULFOXIDE (DMSay)
2az: DIMETHYL SULFOXIDE (DMSaz)
2b: DIMETHYL SULFOXIDE (DMSb)
2ba: DIMETHYL SULFOXIDE (DMSba)
2bb: DIMETHYL SULFOXIDE (DMSbb)
2bc: DIMETHYL SULFOXIDE (DMSbc)
2bd: DIMETHYL SULFOXIDE (DMSbd)
2be: DIMETHYL SULFOXIDE (DMSbe)
2bf: DIMETHYL SULFOXIDE (DMSbf)
2bg: DIMETHYL SULFOXIDE (DMSbg)
2bh: DIMETHYL SULFOXIDE (DMSbh)
2bi: DIMETHYL SULFOXIDE (DMSbi)
2bj: DIMETHYL SULFOXIDE (DMSbj)
2bk: DIMETHYL SULFOXIDE (DMSbk)
2bl: DIMETHYL SULFOXIDE (DMSbl)
2bm: DIMETHYL SULFOXIDE (DMSbm)
2bn: DIMETHYL SULFOXIDE (DMSbn)
2bo: DIMETHYL SULFOXIDE (DMSbo)
2bp: DIMETHYL SULFOXIDE (DMSbp)
2bq: DIMETHYL SULFOXIDE (DMSbq)
2br: DIMETHYL SULFOXIDE (DMSbr)
2bs: DIMETHYL SULFOXIDE (DMSbs)
2bt: DIMETHYL SULFOXIDE (DMSbt)
2bu: DIMETHYL SULFOXIDE (DMSbu)
2bv: DIMETHYL SULFOXIDE (DMSbv)
2bw: DIMETHYL SULFOXIDE (DMSbw)
2bx: DIMETHYL SULFOXIDE (DMSbx)
2by: DIMETHYL SULFOXIDE (DMSby)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
2q: DIMETHYL SULFOXIDE (DMSq)
2r: DIMETHYL SULFOXIDE (DMSr)
2s: DIMETHYL SULFOXIDE (DMSs)
2t: DIMETHYL SULFOXIDE (DMSt)
2u: DIMETHYL SULFOXIDE (DMSu)
2v: DIMETHYL SULFOXIDE (DMSv)
2w: DIMETHYL SULFOXIDE (DMSw)
2x: DIMETHYL SULFOXIDE (DMSx)
2y: DIMETHYL SULFOXIDE (DMSy)
2z: DIMETHYL SULFOXIDE (DMSz)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
4m: SODIUM ION (NAm)
4n: SODIUM ION (NAn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
149
4
Ligand/Ion
D-GALACTONOLACTONE
2
DMS
77
Ligand/Ion
DIMETHYL SULFOXIDE
3
MG
9
Ligand/Ion
MAGNESIUM ION
4
NA
14
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(104, 104)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
ASP A:201 , HIS A:391 , GLU A:461 , MET A:502 , TYR A:503 , GLU A:537 , HIS A:540 , TRP A:568 , PHE A:601 , ASN A:604 , NA A:3101 , HOH A:4021 , HOH A:4691 , HOH A:4736 , DMS A:8014
BINDING SITE FOR RESIDUE 149 A 2001
002
AC2
SOFTWARE
GLU A:416 , HIS A:418 , GLU A:461 , HOH A:4626 , HOH A:4691 , HOH A:4736
BINDING SITE FOR RESIDUE MG A 3001
003
AC3
SOFTWARE
ASP A:15 , ASN A:18 , VAL A:21 , GLN A:163 , ASP A:193
BINDING SITE FOR RESIDUE MG A 3002
004
AC4
SOFTWARE
ASP A:201 , PHE A:601 , ASN A:604 , 149 A:2001 , HOH A:4218
BINDING SITE FOR RESIDUE NA A 3101
005
AC5
SOFTWARE
PHE A:556 , TYR A:559 , PRO A:560 , LEU A:562 , HOH A:4403 , HOH A:4557
BINDING SITE FOR RESIDUE NA A 3102
006
AC6
SOFTWARE
PHE A:931 , PRO A:932 , LEU A:967 , THR A:970 , HOH A:4164
BINDING SITE FOR RESIDUE NA A 3103
007
AC7
SOFTWARE
THR A:229 , VAL A:330 , GLY A:331 , ARG A:333 , ASN A:449 , HIS A:450 , PRO A:451 , ARG A:482 , HOH A:4009
BINDING SITE FOR RESIDUE DMS A 8001
008
AC8
SOFTWARE
ARG A:557 , HIS A:622 , GLN A:623 , GLN A:625 , GLN A:628
BINDING SITE FOR RESIDUE DMS A 8002
009
AC9
SOFTWARE
LYS A:380 , ASN A:383 , PHE A:626 , TYR A:642 , TRP A:708 , HOH A:4170
BINDING SITE FOR RESIDUE DMS A 8003
010
BC1
SOFTWARE
PRO A:32 , PHE A:33 , ALA A:34 , TRP A:36 , ASP A:45 , ALA A:327 , DMS A:8011
BINDING SITE FOR RESIDUE DMS A 8004
011
BC2
SOFTWARE
THR A:271 , LEU A:291 , ARG A:292
BINDING SITE FOR RESIDUE DMS A 8005
012
BC3
SOFTWARE
ARG A:505 , GLU A:508 , PRO A:1001 , VAL A:1003 , GLN A:1008 , HOH A:4025 , HOH A:4284
BINDING SITE FOR RESIDUE DMS A 8006
013
BC4
SOFTWARE
LEU A:54 , ASN A:55 , LEU A:125 , PHE A:127
BINDING SITE FOR RESIDUE DMS A 8007
014
BC5
SOFTWARE
GLU A:334 , VAL A:335 , ARG A:336 , PRO A:480 , HOH A:4166 , HOH A:4169
BINDING SITE FOR RESIDUE DMS A 8008
015
BC6
SOFTWARE
PRO A:584 , SER A:586 , ARG A:973 , HOH A:4083
BINDING SITE FOR RESIDUE DMS A 8009
016
BC7
SOFTWARE
GLY A:275 , VAL A:289 , THR A:290
BINDING SITE FOR RESIDUE DMS A 8010
017
BC8
SOFTWARE
DMS A:8004
BINDING SITE FOR RESIDUE DMS A 8011
018
BC9
SOFTWARE
GLU A:57 , LEU A:125 , THR A:126 , HOH A:4353
BINDING SITE FOR RESIDUE DMS A 8012
019
CC1
SOFTWARE
GLN A:266 , VAL A:267 , ALA A:268 , SER A:269
BINDING SITE FOR RESIDUE DMS A 8013
020
CC2
SOFTWARE
ASN A:102 , VAL A:103 , TRP A:999 , 149 A:2001
BINDING SITE FOR RESIDUE DMS A 8014
021
CC3
SOFTWARE
THR A:108 , PRO A:596
BINDING SITE FOR RESIDUE DMS A 8015
022
CC4
SOFTWARE
PHE A:60 , TRP A:62 , GLU A:80 , ASP A:82
BINDING SITE FOR RESIDUE DMS A 8016
023
CC5
SOFTWARE
ARG A:282 , GLY A:284 , HOH A:4832 , HOH A:4834
BINDING SITE FOR RESIDUE DMS A 8017
024
CC6
SOFTWARE
HIS A:226 , GLN A:445 , TRP A:474 , VAL A:478 , ASP D:428
BINDING SITE FOR RESIDUE DMS A 8018
025
CC7
SOFTWARE
ASP B:201 , HIS B:391 , GLU B:461 , MET B:502 , TYR B:503 , GLU B:537 , HIS B:540 , TRP B:568 , PHE B:601 , ASN B:604 , NA B:3101 , HOH B:4046 , HOH B:4585 , HOH B:4680 , HOH B:4744 , DMS B:8018
BINDING SITE FOR RESIDUE 149 B 2001
026
CC8
SOFTWARE
GLU B:416 , HIS B:418 , GLU B:461 , HOH B:4163 , HOH B:4680 , HOH B:4744
BINDING SITE FOR RESIDUE MG B 3001
027
CC9
SOFTWARE
ASP B:15 , ASN B:18 , VAL B:21 , GLN B:163 , ASP B:193
BINDING SITE FOR RESIDUE MG B 3002
028
DC1
SOFTWARE
HOH B:4528 , HOH B:4703 , HOH B:4894 , HOH B:4924 , HOH B:4925 , HOH B:4926
BINDING SITE FOR RESIDUE MG B 3007
029
DC2
SOFTWARE
ASP B:201 , PHE B:601 , ASN B:604 , 149 B:2001 , HOH B:4263
BINDING SITE FOR RESIDUE NA B 3101
030
DC3
SOFTWARE
PHE B:556 , TYR B:559 , PRO B:560 , LEU B:562 , HOH B:4352 , HOH B:4461
BINDING SITE FOR RESIDUE NA B 3102
031
DC4
SOFTWARE
PHE B:931 , PRO B:932 , LEU B:967 , THR B:970 , HOH B:4203
BINDING SITE FOR RESIDUE NA B 3103
032
DC5
SOFTWARE
SER B:647 , GLU B:650 , LEU B:670 , HOH B:4502 , DMS B:8015
BINDING SITE FOR RESIDUE NA B 3104
033
DC6
SOFTWARE
THR B:229 , VAL B:330 , GLY B:331 , ASN B:449 , PRO B:451 , ARG B:482 , HOH B:4031
BINDING SITE FOR RESIDUE DMS B 8001
034
DC7
SOFTWARE
ARG B:557 , HIS B:622 , GLN B:625 , GLN B:628 , GLN B:718 , HOH B:4608
BINDING SITE FOR RESIDUE DMS B 8002
035
DC8
SOFTWARE
LYS B:380 , ASN B:383 , PHE B:384 , PHE B:626 , TYR B:642 , TRP B:708 , HOH B:4092
BINDING SITE FOR RESIDUE DMS B 8003
036
DC9
SOFTWARE
PRO B:32 , PHE B:33 , ALA B:34 , TRP B:36 , ASP B:45 , ARG B:310 , ALA B:327 , HOH B:4361 , HOH B:4652 , DMS B:8016 , DMS B:8019
BINDING SITE FOR RESIDUE DMS B 8004
037
EC1
SOFTWARE
GLY B:270 , THR B:271 , ARG B:292 , LEU B:293 , HOH B:4481 , HOH B:4546
BINDING SITE FOR RESIDUE DMS B 8005
038
EC2
SOFTWARE
GLU B:314 , HIS B:316 , GLY B:320
BINDING SITE FOR RESIDUE DMS B 8006
039
EC3
SOFTWARE
ARG B:505 , GLU B:508 , PRO B:1001 , VAL B:1003 , HOH B:4054 , HOH B:4339
BINDING SITE FOR RESIDUE DMS B 8007
040
EC4
SOFTWARE
LEU B:54 , ASN B:55 , HOH B:4696
BINDING SITE FOR RESIDUE DMS B 8008
041
EC5
SOFTWARE
VAL B:335 , PRO B:480 , HOH B:4205 , HOH B:4208
BINDING SITE FOR RESIDUE DMS B 8009
042
EC6
SOFTWARE
PRO B:106 , HOH B:4330
BINDING SITE FOR RESIDUE DMS B 8010
043
EC7
SOFTWARE
PRO B:584 , TRP B:585 , SER B:586 , ARG B:973 , ASN C:581
BINDING SITE FOR RESIDUE DMS B 8011
044
EC8
SOFTWARE
GLY B:275 , GLU B:277 , VAL B:289 , THR B:290 , ARG B:292
BINDING SITE FOR RESIDUE DMS B 8012
045
EC9
SOFTWARE
GLU B:744 , ARG B:760 , GLN B:761
BINDING SITE FOR RESIDUE DMS B 8013
046
FC1
SOFTWARE
HIS B:93 , GLY B:94 , TYR B:95
BINDING SITE FOR RESIDUE DMS B 8014
047
FC2
SOFTWARE
ASP B:648 , ASN B:649 , GLU B:650 , NA B:3104
BINDING SITE FOR RESIDUE DMS B 8015
048
FC3
SOFTWARE
ASP B:45 , ARG B:46 , HOH B:4413 , HOH B:4652 , DMS B:8004 , DMS B:8019
BINDING SITE FOR RESIDUE DMS B 8016
049
FC4
SOFTWARE
GLU B:57 , LEU B:125 , THR B:126 , HOH B:4416
BINDING SITE FOR RESIDUE DMS B 8017
050
FC5
SOFTWARE
ASN B:102 , VAL B:103 , SER B:796 , TRP B:999 , 149 B:2001
BINDING SITE FOR RESIDUE DMS B 8018
051
FC6
SOFTWARE
LEU B:397 , HOH B:4032 , HOH B:4630 , DMS B:8004 , DMS B:8016
BINDING SITE FOR RESIDUE DMS B 8019
052
FC7
SOFTWARE
SER B:53
BINDING SITE FOR RESIDUE DMS B 8020
053
FC8
SOFTWARE
TYR B:962
BINDING SITE FOR RESIDUE DMS B 8021
054
FC9
SOFTWARE
ILE B:305 , ASN B:307
BINDING SITE FOR RESIDUE DMS B 8022
055
GC1
SOFTWARE
PHE B:60 , ALA B:61 , GLU B:80 , ALA B:81 , ASP B:82
BINDING SITE FOR RESIDUE DMS B 8023
056
GC2
SOFTWARE
ASP B:428 , TRP C:474 , VAL C:478
BINDING SITE FOR RESIDUE DMS C 8001
057
GC3
SOFTWARE
ASP C:201 , HIS C:391 , GLU C:461 , MET C:502 , TYR C:503 , GLU C:537 , HIS C:540 , TRP C:568 , PHE C:601 , ASN C:604 , NA C:3101 , HOH C:4041 , HOH C:4672 , HOH C:4786 , DMS C:8017
BINDING SITE FOR RESIDUE 149 C 2001
058
GC4
SOFTWARE
GLU C:416 , HIS C:418 , GLU C:461 , HOH C:4672 , HOH C:4786 , HOH C:4880
BINDING SITE FOR RESIDUE MG C 3001
059
GC5
SOFTWARE
ASP C:15 , ASN C:18 , VAL C:21 , GLN C:163 , ASP C:193
BINDING SITE FOR RESIDUE MG C 3002
060
GC6
SOFTWARE
ASP C:201 , PHE C:601 , ASN C:604 , 149 C:2001 , HOH C:4258
BINDING SITE FOR RESIDUE NA C 3101
061
GC7
SOFTWARE
PHE C:556 , TYR C:559 , PRO C:560 , LEU C:562 , HOH C:4348 , HOH C:4626
BINDING SITE FOR RESIDUE NA C 3102
062
GC8
SOFTWARE
PHE C:931 , PRO C:932 , LEU C:967 , THR C:970 , HOH C:4199
BINDING SITE FOR RESIDUE NA C 3103
063
GC9
SOFTWARE
THR C:229 , VAL C:330 , GLY C:331 , ARG C:333 , ASN C:449 , HIS C:450 , PRO C:451 , ARG C:482 , HOH C:4025
BINDING SITE FOR RESIDUE DMS C 8002
064
HC1
SOFTWARE
ARG C:557 , HIS C:622 , GLN C:623 , GLN C:628 , GLN C:718 , HOH C:4031 , HOH C:4640
BINDING SITE FOR RESIDUE DMS C 8003
065
HC2
SOFTWARE
LYS C:380 , ASN C:383 , PHE C:384 , PHE C:626 , TYR C:642 , TRP C:708 , HOH C:4086
BINDING SITE FOR RESIDUE DMS C 8004
066
HC3
SOFTWARE
PRO C:32 , PHE C:33 , ALA C:34 , TRP C:36 , ASP C:45 , ARG C:310 , ALA C:327 , HOH C:4355 , DMS C:8016
BINDING SITE FOR RESIDUE DMS C 8005
067
HC4
SOFTWARE
THR C:271 , LEU C:291 , ARG C:292 , HOH C:4490
BINDING SITE FOR RESIDUE DMS C 8006
068
HC5
SOFTWARE
GLU C:314 , HIS C:316 , GLY C:320 , LEU C:322
BINDING SITE FOR RESIDUE DMS C 8007
069
HC6
SOFTWARE
GLU C:508 , PRO C:1001 , VAL C:1003 , HOH C:4049 , HOH C:4400
BINDING SITE FOR RESIDUE DMS C 8008
070
HC7
SOFTWARE
SER C:53 , LEU C:54 , ASN C:55 , LEU C:125 , PHE C:127
BINDING SITE FOR RESIDUE DMS C 8009
071
HC8
SOFTWARE
PRO C:480 , HOH C:4201 , HOH C:4204
BINDING SITE FOR RESIDUE DMS C 8010
072
HC9
SOFTWARE
ILE C:576 , PRO C:584 , TRP C:585 , SER C:586 , ARG C:973 , HOH C:4110
BINDING SITE FOR RESIDUE DMS C 8011
073
IC1
SOFTWARE
GLY C:275 , GLU C:277 , VAL C:289 , THR C:290 , HOH C:4539
BINDING SITE FOR RESIDUE DMS C 8012
074
IC2
SOFTWARE
VAL C:84 , VAL C:85 , HIS C:93
BINDING SITE FOR RESIDUE DMS C 8013
075
IC3
SOFTWARE
TRP B:474 , VAL B:478 , ASP C:428 , HOH C:4862
BINDING SITE FOR RESIDUE DMS C 8014
076
IC4
SOFTWARE
HIS C:93 , GLY C:94 , TYR C:95
BINDING SITE FOR RESIDUE DMS C 8015
077
IC5
SOFTWARE
TRP C:36 , ASP C:45 , ARG C:46 , HOH C:4684 , DMS C:8005
BINDING SITE FOR RESIDUE DMS C 8016
078
IC6
SOFTWARE
ASN C:102 , VAL C:103 , SER C:796 , TRP C:999 , 149 C:2001
BINDING SITE FOR RESIDUE DMS C 8017
079
IC7
SOFTWARE
PRO C:306 , ASN C:307
BINDING SITE FOR RESIDUE DMS C 8018
080
IC8
SOFTWARE
ASP C:610 , THR C:612 , ARG C:973 , HOH C:4089 , HOH C:4182
BINDING SITE FOR RESIDUE DMS C 8019
081
IC9
SOFTWARE
LEU C:250 , ARG C:251 , ASP C:252
BINDING SITE FOR RESIDUE DMS C 8020
082
JC1
SOFTWARE
GLN B:49 , SER C:48 , GLN C:49
BINDING SITE FOR RESIDUE DMS C 8021
083
JC2
SOFTWARE
ASP A:428 , GLN D:445 , TRP D:474 , VAL D:478 , HOH D:4003
BINDING SITE FOR RESIDUE DMS D 8001
084
JC3
SOFTWARE
ASP D:201 , HIS D:391 , GLU D:461 , MET D:502 , TYR D:503 , GLU D:537 , HIS D:540 , TRP D:568 , PHE D:601 , ASN D:604 , NA D:3101 , HOH D:4044 , HOH D:4057 , HOH D:4670 , DMS D:8014
BINDING SITE FOR RESIDUE 149 D 2001
085
JC4
SOFTWARE
GLU D:416 , HIS D:418 , GLU D:461 , HOH D:4044 , HOH D:4670 , HOH D:4797
BINDING SITE FOR RESIDUE MG D 3001
086
JC5
SOFTWARE
ASP D:15 , ASN D:18 , VAL D:21 , GLN D:163 , ASP D:193
BINDING SITE FOR RESIDUE MG D 3002
087
JC6
SOFTWARE
ASP D:201 , PHE D:601 , ASN D:604 , 149 D:2001 , HOH D:4266
BINDING SITE FOR RESIDUE NA D 3101
088
JC7
SOFTWARE
PHE D:556 , TYR D:559 , PRO D:560 , LEU D:562 , HOH D:4338 , HOH D:4436
BINDING SITE FOR RESIDUE NA D 3102
089
JC8
SOFTWARE
PHE D:931 , PRO D:932 , LEU D:967 , THR D:970 , HOH D:4211 , HOH D:4760
BINDING SITE FOR RESIDUE NA D 3103
090
JC9
SOFTWARE
SER D:647 , GLU D:650 , LEU D:670 , HOH D:4568 , HOH D:4639
BINDING SITE FOR RESIDUE NA D 3104
091
KC1
SOFTWARE
THR D:229 , VAL D:330 , GLY D:331 , ARG D:333 , ASN D:449 , PRO D:451 , ARG D:482 , HOH D:4042
BINDING SITE FOR RESIDUE DMS D 8002
092
KC2
SOFTWARE
ARG D:557 , HIS D:622 , GLN D:623 , GLN D:628 , GLN D:718 , HOH D:4048 , HOH D:4210
BINDING SITE FOR RESIDUE DMS D 8003
093
KC3
SOFTWARE
LYS D:380 , ASN D:383 , PHE D:626 , TYR D:642 , TRP D:708 , HOH D:4218
BINDING SITE FOR RESIDUE DMS D 8004
094
KC4
SOFTWARE
PRO D:32 , PHE D:33 , ALA D:34 , TRP D:36 , ASP D:45 , ALA D:327 , HOH D:4342 , DMS D:8013
BINDING SITE FOR RESIDUE DMS D 8005
095
KC5
SOFTWARE
THR D:271 , THR D:290 , LEU D:291 , ARG D:292
BINDING SITE FOR RESIDUE DMS D 8006
096
KC6
SOFTWARE
ARG D:505 , GLU D:508 , PRO D:1001 , VAL D:1003 , HOH D:4065 , HOH D:4328
BINDING SITE FOR RESIDUE DMS D 8007
097
KC7
SOFTWARE
SER D:53 , LEU D:54 , ASN D:55 , LEU D:125
BINDING SITE FOR RESIDUE DMS D 8008
098
KC8
SOFTWARE
GLU D:334 , VAL D:335 , ARG D:336 , PRO D:480 , HOH D:4213 , HOH D:4216
BINDING SITE FOR RESIDUE DMS D 8009
099
KC9
SOFTWARE
ILE D:576 , PRO D:584 , TRP D:585 , SER D:586 , ARG D:973
BINDING SITE FOR RESIDUE DMS D 8010
100
LC1
SOFTWARE
GLY D:276 , VAL D:289 , THR D:290 , HOH D:4535
BINDING SITE FOR RESIDUE DMS D 8011
101
LC2
SOFTWARE
THR D:83 , VAL D:84 , VAL D:85 , HIS D:93
BINDING SITE FOR RESIDUE DMS D 8012
102
LC3
SOFTWARE
PRO D:47 , DMS D:8005
BINDING SITE FOR RESIDUE DMS D 8013
103
LC4
SOFTWARE
ASN D:102 , VAL D:103 , HIS D:418 , SER D:796 , 149 D:2001
BINDING SITE FOR RESIDUE DMS D 8014
104
LC5
SOFTWARE
TYR D:472 , THR D:494 , THR D:496
BINDING SITE FOR RESIDUE DMS D 8015
[
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F2_1 (A:385-410,B:385-410,C:385-410,D:38...)
2: GLYCOSYL_HYDROL_F2_2 (A:447-461,B:447-461,C:447-461,D:44...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F2_1
PS00719
Glycosyl hydrolases family 2 signature 1.
BGAL_ECOLI
386-411
4
A:385-410
B:385-410
C:385-410
D:385-410
2
GLYCOSYL_HYDROL_F2_2
PS00608
Glycosyl hydrolases family 2 acid/base catalyst.
BGAL_ECOLI
448-462
4
A:447-461
B:447-461
C:447-461
D:447-461
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 20)
Info
All SCOP Domains
1a: SCOP_d3vdba1 (A:9-219)
1b: SCOP_d3vdbb1 (B:9-219)
1c: SCOP_d3vdbc1 (C:9-219)
1d: SCOP_d3vdbd1 (D:9-219)
2a: SCOP_d3vdba2 (A:220-333)
2b: SCOP_d3vdba4 (A:626-730)
2c: SCOP_d3vdbb2 (B:220-333)
2d: SCOP_d3vdbb4 (B:626-730)
2e: SCOP_d3vdbc2 (C:220-333)
2f: SCOP_d3vdbc4 (C:626-730)
2g: SCOP_d3vdbd2 (D:220-333)
2h: SCOP_d3vdbd4 (D:626-730)
3a: SCOP_d3vdba5 (A:731-1023)
3b: SCOP_d3vdbb5 (B:731-1023)
3c: SCOP_d3vdbc5 (C:731-1023)
3d: SCOP_d3vdbd5 (D:731-1023)
4a: SCOP_d3vdba3 (A:334-625)
4b: SCOP_d3vdbb3 (B:334-625)
4c: SCOP_d3vdbc3 (C:334-625)
4d: SCOP_d3vdbd3 (D:334-625)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
beta-Galactosidase/glucuronidase, N-terminal domain
(49)
Protein domain
:
beta-Galactosidase
(42)
Escherichia coli [TaxId: 562]
(41)
1a
d3vdba1
A:9-219
1b
d3vdbb1
B:9-219
1c
d3vdbc1
C:9-219
1d
d3vdbd1
D:9-219
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
beta-Galactosidase/glucuronidase domain
(49)
Protein domain
:
beta-Galactosidase, domains 2 and 4
(42)
Escherichia coli [TaxId: 562]
(41)
2a
d3vdba2
A:220-333
2b
d3vdba4
A:626-730
2c
d3vdbb2
B:220-333
2d
d3vdbb4
B:626-730
2e
d3vdbc2
C:220-333
2f
d3vdbc4
C:626-730
2g
d3vdbd2
D:220-333
2h
d3vdbd4
D:626-730
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
beta-Galactosidase, domain 5
(42)
Protein domain
:
beta-Galactosidase, domain 5
(42)
Escherichia coli [TaxId: 562]
(41)
3a
d3vdba5
A:731-1023
3b
d3vdbb5
B:731-1023
3c
d3vdbc5
C:731-1023
3d
d3vdbd5
D:731-1023
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
beta-Galactosidase, domain 3
(42)
Escherichia coli [TaxId: 562]
(41)
4a
d3vdba3
A:334-625
4b
d3vdbb3
B:334-625
4c
d3vdbc3
C:334-625
4d
d3vdbd3
D:334-625
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CATH Domains
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