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3VD9
Asym. Unit
Info
Asym.Unit (756 KB)
Biol.Unit 1 (743 KB)
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(1)
Title
:
E. COLI (LACZ) BETA-GALACTOSIDASE (N460S) IN COMPLEX WITH IPTG
Authors
:
R. W. Wheatley, J. C. Kappelhoff, J. N. Hahn, M. L. Dugdale, M. J. Dutkosk S. D. Tamman, M. E. Fraser, R. E. Huber
Date
:
04 Jan 12 (Deposition) - 11 Apr 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transition State Stabilization, Substrate Binding, 2-Stage Binding, Tim Barrel (Alpha/Beta Barrel), Jelly-Roll Barrel, Immunoglobulin, Beta Supersandwich, Glycosidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. W. Wheatley, J. C. Kappelhoff, J. N. Hahn, M. L. Dugdale, M. J. Dutkoski, S. D. Tamman, M. E. Fraser, R. E. Huber
Substitution For Asn460 Cripples {Beta}-Galactosidase (Escherichia Coli) By Increasing Substrate Affinity And Decreasing Transition State Stability.
Arch. Biochem. Biophys. V. 521 51 2012
[
close entry info
]
Hetero Components
(4, 93)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1aa: DIMETHYL SULFOXIDE (DMSaa)
1ab: DIMETHYL SULFOXIDE (DMSab)
1ac: DIMETHYL SULFOXIDE (DMSac)
1ad: DIMETHYL SULFOXIDE (DMSad)
1ae: DIMETHYL SULFOXIDE (DMSae)
1af: DIMETHYL SULFOXIDE (DMSaf)
1ag: DIMETHYL SULFOXIDE (DMSag)
1ah: DIMETHYL SULFOXIDE (DMSah)
1ai: DIMETHYL SULFOXIDE (DMSai)
1aj: DIMETHYL SULFOXIDE (DMSaj)
1ak: DIMETHYL SULFOXIDE (DMSak)
1al: DIMETHYL SULFOXIDE (DMSal)
1am: DIMETHYL SULFOXIDE (DMSam)
1an: DIMETHYL SULFOXIDE (DMSan)
1ao: DIMETHYL SULFOXIDE (DMSao)
1ap: DIMETHYL SULFOXIDE (DMSap)
1aq: DIMETHYL SULFOXIDE (DMSaq)
1ar: DIMETHYL SULFOXIDE (DMSar)
1as: DIMETHYL SULFOXIDE (DMSas)
1at: DIMETHYL SULFOXIDE (DMSat)
1au: DIMETHYL SULFOXIDE (DMSau)
1av: DIMETHYL SULFOXIDE (DMSav)
1aw: DIMETHYL SULFOXIDE (DMSaw)
1ax: DIMETHYL SULFOXIDE (DMSax)
1ay: DIMETHYL SULFOXIDE (DMSay)
1az: DIMETHYL SULFOXIDE (DMSaz)
1b: DIMETHYL SULFOXIDE (DMSb)
1ba: DIMETHYL SULFOXIDE (DMSba)
1bb: DIMETHYL SULFOXIDE (DMSbb)
1bc: DIMETHYL SULFOXIDE (DMSbc)
1bd: DIMETHYL SULFOXIDE (DMSbd)
1be: DIMETHYL SULFOXIDE (DMSbe)
1bf: DIMETHYL SULFOXIDE (DMSbf)
1bg: DIMETHYL SULFOXIDE (DMSbg)
1bh: DIMETHYL SULFOXIDE (DMSbh)
1bi: DIMETHYL SULFOXIDE (DMSbi)
1bj: DIMETHYL SULFOXIDE (DMSbj)
1bk: DIMETHYL SULFOXIDE (DMSbk)
1bl: DIMETHYL SULFOXIDE (DMSbl)
1c: DIMETHYL SULFOXIDE (DMSc)
1d: DIMETHYL SULFOXIDE (DMSd)
1e: DIMETHYL SULFOXIDE (DMSe)
1f: DIMETHYL SULFOXIDE (DMSf)
1g: DIMETHYL SULFOXIDE (DMSg)
1h: DIMETHYL SULFOXIDE (DMSh)
1i: DIMETHYL SULFOXIDE (DMSi)
1j: DIMETHYL SULFOXIDE (DMSj)
1k: DIMETHYL SULFOXIDE (DMSk)
1l: DIMETHYL SULFOXIDE (DMSl)
1m: DIMETHYL SULFOXIDE (DMSm)
1n: DIMETHYL SULFOXIDE (DMSn)
1o: DIMETHYL SULFOXIDE (DMSo)
1p: DIMETHYL SULFOXIDE (DMSp)
1q: DIMETHYL SULFOXIDE (DMSq)
1r: DIMETHYL SULFOXIDE (DMSr)
1s: DIMETHYL SULFOXIDE (DMSs)
1t: DIMETHYL SULFOXIDE (DMSt)
1u: DIMETHYL SULFOXIDE (DMSu)
1v: DIMETHYL SULFOXIDE (DMSv)
1w: DIMETHYL SULFOXIDE (DMSw)
1x: DIMETHYL SULFOXIDE (DMSx)
1y: DIMETHYL SULFOXIDE (DMSy)
1z: DIMETHYL SULFOXIDE (DMSz)
2a: ISOPROPYL-1-BETA-D-THIOGALACTOSIDE (IPTa)
2b: ISOPROPYL-1-BETA-D-THIOGALACTOSIDE (IPTb)
2c: ISOPROPYL-1-BETA-D-THIOGALACTOSIDE (IPTc)
2d: ISOPROPYL-1-BETA-D-THIOGALACTOSIDE (IPTd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
4m: SODIUM ION (NAm)
4n: SODIUM ION (NAn)
4o: SODIUM ION (NAo)
4p: SODIUM ION (NAp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMS
64
Ligand/Ion
DIMETHYL SULFOXIDE
2
IPT
4
Ligand/Ion
ISOPROPYL-1-BETA-D-THIOGALACTOSIDE
3
MG
9
Ligand/Ion
MAGNESIUM ION
4
NA
16
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(93, 93)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
91: KC1 (SOFTWARE)
92: KC2 (SOFTWARE)
93: KC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:416 , HIS A:418 , GLU A:461 , HOH A:4151 , HOH A:4768 , HOH A:4902
BINDING SITE FOR RESIDUE MG A 3001
02
AC2
SOFTWARE
ASP A:15 , ASN A:18 , VAL A:21 , GLN A:163 , ASP A:193
BINDING SITE FOR RESIDUE MG A 3002
03
AC3
SOFTWARE
ASP A:201 , PHE A:601 , ASN A:604 , IPT A:2001 , HOH A:4256
BINDING SITE FOR RESIDUE NA A 3101
04
AC4
SOFTWARE
PHE A:556 , TYR A:559 , PRO A:560 , LEU A:562 , HOH A:4358 , HOH A:4490
BINDING SITE FOR RESIDUE NA A 3102
05
AC5
SOFTWARE
PHE A:931 , PRO A:932 , LEU A:967 , THR A:970 , HOH A:4195 , HOH A:4607
BINDING SITE FOR RESIDUE NA A 3103
06
AC6
SOFTWARE
ASN A:597 , HOH A:4389 , HOH A:4473 , HOH A:4884 , HOH A:4894
BINDING SITE FOR RESIDUE NA A 3105
07
AC7
SOFTWARE
ASN A:102 , ASP A:201 , GLU A:461 , MET A:502 , TYR A:503 , GLU A:537 , HIS A:540 , PHE A:601 , ASN A:604 , TRP A:999 , NA A:3101 , HOH A:4001 , HOH A:4768
BINDING SITE FOR RESIDUE IPT A 2001
08
AC8
SOFTWARE
THR A:229 , VAL A:330 , GLY A:331 , ASN A:449 , PRO A:451 , ARG A:482 , HOH A:4011
BINDING SITE FOR RESIDUE DMS A 8001
09
AC9
SOFTWARE
ARG A:557 , HIS A:622 , GLN A:625 , GLN A:628 , HOH A:4194
BINDING SITE FOR RESIDUE DMS A 8002
10
BC1
SOFTWARE
LYS A:380 , ASN A:383 , PHE A:626 , TYR A:642 , TRP A:708 , HOH A:4202
BINDING SITE FOR RESIDUE DMS A 8003
11
BC2
SOFTWARE
PRO A:32 , PHE A:33 , ALA A:34 , TRP A:36 , ASP A:45 , ALA A:327 , DMS A:8011
BINDING SITE FOR RESIDUE DMS A 8004
12
BC3
SOFTWARE
THR A:271 , LEU A:291 , ARG A:292 , HOH A:4390
BINDING SITE FOR RESIDUE DMS A 8005
13
BC4
SOFTWARE
SER A:53 , LEU A:54 , ASN A:55 , LEU A:125 , HOH A:4672
BINDING SITE FOR RESIDUE DMS A 8006
14
BC5
SOFTWARE
GLU A:334 , VAL A:335 , ARG A:336 , HOH A:4197 , HOH A:4200 , HOH A:4307 , HOH A:4424
BINDING SITE FOR RESIDUE DMS A 8007
15
BC6
SOFTWARE
ILE A:576 , PRO A:584 , TRP A:585 , SER A:586 , ARG A:973 , HOH A:4100
BINDING SITE FOR RESIDUE DMS A 8008
16
BC7
SOFTWARE
VAL A:289 , THR A:290 , HOH A:4388
BINDING SITE FOR RESIDUE DMS A 8009
17
BC8
SOFTWARE
ASP A:428 , PRO A:430 , TRP D:474 , VAL D:478
BINDING SITE FOR RESIDUE DMS A 8010
18
BC9
SOFTWARE
PRO A:47 , DMS A:8004
BINDING SITE FOR RESIDUE DMS A 8011
19
CC1
SOFTWARE
GLU A:57 , TRP A:58 , LEU A:125 , THR A:126 , HOH A:4433
BINDING SITE FOR RESIDUE DMS A 8012
20
CC2
SOFTWARE
ARG A:230 , PHE A:231 , ASN A:232 , ARG A:237
BINDING SITE FOR RESIDUE DMS A 8013
21
CC3
SOFTWARE
GLU B:416 , HIS B:418 , GLU B:461 , HOH B:4032 , HOH B:4171 , HOH B:4857
BINDING SITE FOR RESIDUE MG B 3001
22
CC4
SOFTWARE
ASP B:15 , ASN B:18 , VAL B:21 , GLN B:163 , ASP B:193
BINDING SITE FOR RESIDUE MG B 3002
23
CC5
SOFTWARE
HOH B:4676 , HOH B:4861 , HOH B:4936 , HOH B:5049 , HOH B:5050
BINDING SITE FOR RESIDUE MG B 3007
24
CC6
SOFTWARE
TYR B:100 , ASP B:201 , PHE B:601 , ASN B:604 , IPT B:2001 , HOH B:4282
BINDING SITE FOR RESIDUE NA B 3101
25
CC7
SOFTWARE
PHE B:556 , TYR B:559 , PRO B:560 , LEU B:562 , HOH B:4397 , HOH B:4554
BINDING SITE FOR RESIDUE NA B 3102
26
CC8
SOFTWARE
PHE B:931 , PRO B:932 , LEU B:967 , THR B:970 , HOH B:4218
BINDING SITE FOR RESIDUE NA B 3103
27
CC9
SOFTWARE
SER B:647 , GLU B:650 , LEU B:670 , HOH B:5054
BINDING SITE FOR RESIDUE NA B 3104
28
DC1
SOFTWARE
ASN B:597 , HOH B:4235 , HOH B:4426 , HOH B:4540 , HOH B:5056
BINDING SITE FOR RESIDUE NA B 3105
29
DC2
SOFTWARE
ASN B:102 , ASP B:201 , GLU B:461 , MET B:502 , GLU B:537 , HIS B:540 , PHE B:601 , ASN B:604 , TRP B:999 , NA B:3101 , HOH B:4020 , HOH B:4857 , HOH B:4920
BINDING SITE FOR RESIDUE IPT B 2001
30
DC3
SOFTWARE
THR B:229 , VAL B:330 , GLY B:331 , ASN B:449 , PRO B:451 , ARG B:482 , HOH B:4029
BINDING SITE FOR RESIDUE DMS B 8001
31
DC4
SOFTWARE
ARG B:557 , HIS B:622 , GLN B:625 , GLN B:628 , GLN B:718 , HOH B:4806
BINDING SITE FOR RESIDUE DMS B 8002
32
DC5
SOFTWARE
LYS B:380 , ASN B:383 , PHE B:626 , TYR B:642 , TRP B:708 , HOH B:4225
BINDING SITE FOR RESIDUE DMS B 8003
33
DC6
SOFTWARE
PHE B:33 , ALA B:34 , TRP B:36 , ASP B:45 , ALA B:327 , HOH B:4404 , HOH B:4758 , DMS B:8013
BINDING SITE FOR RESIDUE DMS B 8004
34
DC7
SOFTWARE
GLY B:270 , THR B:271 , ARG B:292 , HOH B:4712
BINDING SITE FOR RESIDUE DMS B 8005
35
DC8
SOFTWARE
THR B:257 , GLU B:314 , HIS B:316 , GLY B:320 , HOH B:4015
BINDING SITE FOR RESIDUE DMS B 8006
36
DC9
SOFTWARE
GLU B:508 , VAL B:1003 , HOH B:4378
BINDING SITE FOR RESIDUE DMS B 8007
37
EC1
SOFTWARE
LEU B:54 , ASN B:55 , GLU B:57 , LEU B:125 , PHE B:127
BINDING SITE FOR RESIDUE DMS B 8008
38
EC2
SOFTWARE
GLU B:334 , VAL B:335 , PRO B:480 , HOH B:4220 , HOH B:4223 , HOH B:4783
BINDING SITE FOR RESIDUE DMS B 8009
39
EC3
SOFTWARE
ILE B:576 , PRO B:584 , TRP B:585 , SER B:586 , ARG B:973 , HOH B:4119 , ASN C:581
BINDING SITE FOR RESIDUE DMS B 8010
40
EC4
SOFTWARE
GLY B:275 , GLY B:276 , VAL B:289 , THR B:290 , ARG B:292 , HOH B:4675
BINDING SITE FOR RESIDUE DMS B 8011
41
EC5
SOFTWARE
ASP B:428 , PRO B:430 , TRP C:474 , VAL C:478 , HOH C:4568
BINDING SITE FOR RESIDUE DMS B 8012
42
EC6
SOFTWARE
ASP B:45 , PRO B:47 , HOH B:4469 , HOH B:4730 , DMS B:8004
BINDING SITE FOR RESIDUE DMS B 8013
43
EC7
SOFTWARE
GLU B:57 , LEU B:125 , THR B:126 , HOH B:4488
BINDING SITE FOR RESIDUE DMS B 8014
44
EC8
SOFTWARE
GLU B:369 , LEU B:401 , ARG B:404 , GLU C:57
BINDING SITE FOR RESIDUE DMS B 8015
45
EC9
SOFTWARE
PHE B:60 , ALA B:61 , TRP B:62 , GLU B:80 , ALA B:81 , ASP B:82 , HOH B:4532 , HOH B:4873
BINDING SITE FOR RESIDUE DMS B 8016
46
FC1
SOFTWARE
TYR B:472 , THR B:494 , THR B:496 , ARG B:531 , HOH B:4570
BINDING SITE FOR RESIDUE DMS B 8017
47
FC2
SOFTWARE
THR B:44 , ASP B:45 , ARG B:46 , PRO B:47 , HOH B:4741 , HOH C:4793
BINDING SITE FOR RESIDUE DMS B 8018
48
FC3
SOFTWARE
PRO B:306 , ASN B:307
BINDING SITE FOR RESIDUE DMS B 8019
49
FC4
SOFTWARE
GLN B:445 , ARG B:448 , TRP B:474 , VAL B:478 , HOH B:4457 , ASP C:428 , PRO C:430
BINDING SITE FOR RESIDUE DMS B 8020
50
FC5
SOFTWARE
GLU C:416 , HIS C:418 , GLU C:461 , HOH C:4877 , HOH C:4954 , HOH C:5023
BINDING SITE FOR RESIDUE MG C 3001
51
FC6
SOFTWARE
ASP C:15 , ASN C:18 , VAL C:21 , GLN C:163 , ASP C:193
BINDING SITE FOR RESIDUE MG C 3002
52
FC7
SOFTWARE
TYR C:100 , ASP C:201 , PHE C:601 , ASN C:604 , IPT C:2001 , HOH C:4297
BINDING SITE FOR RESIDUE NA C 3101
53
FC8
SOFTWARE
PHE C:556 , TYR C:559 , PRO C:560 , LEU C:562 , HOH C:4411 , HOH C:4757
BINDING SITE FOR RESIDUE NA C 3102
54
FC9
SOFTWARE
PHE C:931 , PRO C:932 , LEU C:967 , THR C:970 , HOH C:4228 , HOH C:4640
BINDING SITE FOR RESIDUE NA C 3103
55
GC1
SOFTWARE
SER C:647 , GLU C:650 , LEU C:670 , HOH C:4858 , HOH C:5085
BINDING SITE FOR RESIDUE NA C 3104
56
GC2
SOFTWARE
ASN C:102 , ASP C:201 , GLU C:461 , MET C:502 , TYR C:503 , GLU C:537 , HIS C:540 , PHE C:601 , ASN C:604 , TRP C:999 , NA C:3101 , HOH C:4030 , HOH C:5023
BINDING SITE FOR RESIDUE IPT C 2001
57
GC3
SOFTWARE
THR C:229 , VAL C:330 , GLY C:331 , ARG C:448 , ASN C:449 , PRO C:451 , ARG C:482 , HOH C:4040
BINDING SITE FOR RESIDUE DMS C 8001
58
GC4
SOFTWARE
ARG C:557 , HIS C:622 , GLN C:625 , GLN C:628 , HOH C:4921
BINDING SITE FOR RESIDUE DMS C 8002
59
GC5
SOFTWARE
LYS C:380 , ASN C:383 , PHE C:626 , TYR C:642 , TRP C:708 , HOH C:4235
BINDING SITE FOR RESIDUE DMS C 8003
60
GC6
SOFTWARE
PHE C:33 , ALA C:34 , TRP C:36 , ASP C:45 , ALA C:327 , HOH C:4423 , DMS C:8015
BINDING SITE FOR RESIDUE DMS C 8004
61
GC7
SOFTWARE
THR C:271 , LEU C:291 , ARG C:292
BINDING SITE FOR RESIDUE DMS C 8005
62
GC8
SOFTWARE
GLU C:314 , HIS C:316 , GLY C:320 , LEU C:322
BINDING SITE FOR RESIDUE DMS C 8006
63
GC9
SOFTWARE
GLU C:508 , PRO C:1001 , VAL C:1003 , HOH C:4065 , HOH C:4857
BINDING SITE FOR RESIDUE DMS C 8007
64
HC1
SOFTWARE
SER C:53 , LEU C:54 , ASN C:55 , LEU C:125 , PHE C:127 , HOH C:4793
BINDING SITE FOR RESIDUE DMS C 8008
65
HC2
SOFTWARE
GLU C:334 , VAL C:335 , PRO C:480 , HOH C:4233
BINDING SITE FOR RESIDUE DMS C 8009
66
HC3
SOFTWARE
PRO C:106 , HOH C:4380
BINDING SITE FOR RESIDUE DMS C 8010
67
HC4
SOFTWARE
ILE C:576 , SER C:586 , ARG C:973 , HOH C:4129
BINDING SITE FOR RESIDUE DMS C 8011
68
HC5
SOFTWARE
GLY C:276 , VAL C:289 , THR C:290 , ARG C:292 , HOH C:4615 , HOH C:4711
BINDING SITE FOR RESIDUE DMS C 8012
69
HC6
SOFTWARE
VAL C:84 , VAL C:85 , HIS C:93
BINDING SITE FOR RESIDUE DMS C 8013
70
HC7
SOFTWARE
HIS C:93 , GLY C:94 , TYR C:95
BINDING SITE FOR RESIDUE DMS C 8014
71
HC8
SOFTWARE
ASP C:45 , DMS C:8004
BINDING SITE FOR RESIDUE DMS C 8015
72
HC9
SOFTWARE
THR C:83
BINDING SITE FOR RESIDUE DMS C 8016
73
IC1
SOFTWARE
GLU C:57 , LEU C:125 , THR C:126 , HOH C:4509
BINDING SITE FOR RESIDUE DMS C 8017
74
IC2
SOFTWARE
GLU D:416 , HIS D:418 , GLU D:461 , HOH D:4183 , HOH D:4726 , HOH D:4793
BINDING SITE FOR RESIDUE MG D 3001
75
IC3
SOFTWARE
ASP D:15 , ASN D:18 , VAL D:21 , GLN D:163 , ASP D:193
BINDING SITE FOR RESIDUE MG D 3002
76
IC4
SOFTWARE
TYR D:100 , ASP D:201 , PHE D:601 , ASN D:604 , IPT D:2001 , HOH D:4177
BINDING SITE FOR RESIDUE NA D 3101
77
IC5
SOFTWARE
PHE D:556 , TYR D:559 , PRO D:560 , LEU D:562 , HOH D:4390 , HOH D:4519
BINDING SITE FOR RESIDUE NA D 3102
78
IC6
SOFTWARE
PHE D:931 , PRO D:932 , LEU D:967 , THR D:970 , HOH D:4563 , HOH D:4663
BINDING SITE FOR RESIDUE NA D 3103
79
IC7
SOFTWARE
ASN D:102 , ASP D:201 , GLU D:461 , MET D:502 , GLU D:537 , HIS D:540 , PHE D:601 , ASN D:604 , TRP D:999 , NA D:3101 , HOH D:4034 , HOH D:4793
BINDING SITE FOR RESIDUE IPT D 2001
80
IC8
SOFTWARE
THR D:229 , VAL D:330 , GLY D:331 , ARG D:333 , ASN D:449 , HIS D:450 , PRO D:451 , ARG D:482 , HOH D:4707
BINDING SITE FOR RESIDUE DMS D 8001
81
IC9
SOFTWARE
ARG D:557 , HIS D:622 , GLN D:623 , GLN D:628
BINDING SITE FOR RESIDUE DMS D 8002
82
JC1
SOFTWARE
LYS D:380 , ASN D:383 , PHE D:626 , TYR D:642 , TRP D:708 , HOH D:4233
BINDING SITE FOR RESIDUE DMS D 8003
83
JC2
SOFTWARE
PRO D:32 , PHE D:33 , ALA D:34 , TRP D:36 , ASP D:45 , ALA D:327 , HOH D:4217 , DMS D:8013
BINDING SITE FOR RESIDUE DMS D 8004
84
JC3
SOFTWARE
THR D:271 , THR D:290 , LEU D:291 , ARG D:292
BINDING SITE FOR RESIDUE DMS D 8005
85
JC4
SOFTWARE
ARG D:505 , GLU D:508 , PRO D:1001 , VAL D:1003 , HOH D:4373
BINDING SITE FOR RESIDUE DMS D 8006
86
JC5
SOFTWARE
SER D:53 , LEU D:54 , ASN D:55 , LEU D:125
BINDING SITE FOR RESIDUE DMS D 8007
87
JC6
SOFTWARE
VAL D:335 , SER D:481
BINDING SITE FOR RESIDUE DMS D 8008
88
JC7
SOFTWARE
PRO D:106 , HOH D:4362
BINDING SITE FOR RESIDUE DMS D 8009
89
JC8
SOFTWARE
ILE D:576 , PRO D:584 , TRP D:585 , SER D:586 , ARG D:973
BINDING SITE FOR RESIDUE DMS D 8010
90
JC9
SOFTWARE
THR D:290 , HOH D:4646
BINDING SITE FOR RESIDUE DMS D 8011
91
KC1
SOFTWARE
LYS D:621 , ARG D:699 , HOH D:4336
BINDING SITE FOR RESIDUE DMS D 8012
92
KC2
SOFTWARE
PRO D:47 , HOH D:4453 , HOH D:4753 , DMS D:8004
BINDING SITE FOR RESIDUE DMS D 8013
93
KC3
SOFTWARE
PRO D:106 , ILE D:107 , THR D:108
BINDING SITE FOR RESIDUE DMS D 8014
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F2_1 (A:385-410,B:385-410,C:385-410,D:38...)
2: GLYCOSYL_HYDROL_F2_2 (A:447-461,B:447-461,C:447-461,D:44...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F2_1
PS00719
Glycosyl hydrolases family 2 signature 1.
BGAL_ECOLI
386-411
4
A:385-410
B:385-410
C:385-410
D:385-410
2
GLYCOSYL_HYDROL_F2_2
PS00608
Glycosyl hydrolases family 2 acid/base catalyst.
BGAL_ECOLI
448-462
4
A:447-461
B:447-461
C:447-461
D:447-461
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 20)
Info
All SCOP Domains
1a: SCOP_d3vd9a1 (A:9-219)
1b: SCOP_d3vd9b1 (B:8-219)
1c: SCOP_d3vd9c1 (C:9-219)
1d: SCOP_d3vd9d1 (D:9-219)
2a: SCOP_d3vd9a2 (A:220-333)
2b: SCOP_d3vd9a4 (A:626-730)
2c: SCOP_d3vd9b2 (B:220-333)
2d: SCOP_d3vd9b4 (B:626-730)
2e: SCOP_d3vd9c2 (C:220-333)
2f: SCOP_d3vd9c4 (C:626-730)
2g: SCOP_d3vd9d2 (D:220-333)
2h: SCOP_d3vd9d4 (D:626-730)
3a: SCOP_d3vd9a5 (A:731-1023)
3b: SCOP_d3vd9b5 (B:731-1023)
3c: SCOP_d3vd9c5 (C:731-1023)
3d: SCOP_d3vd9d5 (D:731-1023)
4a: SCOP_d3vd9a3 (A:334-625)
4b: SCOP_d3vd9b3 (B:334-625)
4c: SCOP_d3vd9c3 (C:334-625)
4d: SCOP_d3vd9d3 (D:334-625)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
beta-Galactosidase/glucuronidase, N-terminal domain
(49)
Protein domain
:
beta-Galactosidase
(42)
Escherichia coli [TaxId: 562]
(41)
1a
d3vd9a1
A:9-219
1b
d3vd9b1
B:8-219
1c
d3vd9c1
C:9-219
1d
d3vd9d1
D:9-219
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
beta-Galactosidase/glucuronidase domain
(49)
Protein domain
:
beta-Galactosidase, domains 2 and 4
(42)
Escherichia coli [TaxId: 562]
(41)
2a
d3vd9a2
A:220-333
2b
d3vd9a4
A:626-730
2c
d3vd9b2
B:220-333
2d
d3vd9b4
B:626-730
2e
d3vd9c2
C:220-333
2f
d3vd9c4
C:626-730
2g
d3vd9d2
D:220-333
2h
d3vd9d4
D:626-730
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
beta-Galactosidase, domain 5
(42)
Protein domain
:
beta-Galactosidase, domain 5
(42)
Escherichia coli [TaxId: 562]
(41)
3a
d3vd9a5
A:731-1023
3b
d3vd9b5
B:731-1023
3c
d3vd9c5
C:731-1023
3d
d3vd9d5
D:731-1023
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
beta-Galactosidase, domain 3
(42)
Escherichia coli [TaxId: 562]
(41)
4a
d3vd9a3
A:334-625
4b
d3vd9b3
B:334-625
4c
d3vd9c3
C:334-625
4d
d3vd9d3
D:334-625
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CATH Domains
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Pfam Domains
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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