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3VCN
Asym. Unit
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Asym.Unit (301 KB)
Biol.Unit 1 (295 KB)
Biol.Unit 2, α-C (1.1 MB)
Biol.Unit 2 (1.1 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANNONATE DEHYDRATASE (TARGET EFI-502209) FROM CAULOBACTER CRESCENTUS CB15
Authors
:
Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Date
:
04 Jan 12 (Deposition) - 25 Jan 12 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: A,C (4x)
Keywords
:
Enolase, Magnesium Binding Site, Enzyme Function Initiative, Efi, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo
Crystal Structure Of Mannonate Dehydratase From Caulobacter Crescentus Cb15
To Be Published
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
CO3
2
Ligand/Ion
CARBONATE ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:211 , GLU A:237 , GLU A:263 , CO3 A:503 , HOH A:635 , HOH A:791
BINDING SITE FOR RESIDUE MG A 501
02
AC2
SOFTWARE
ASN A:38 , HIS A:213 , GLU A:263 , HIS A:313 , ALA A:315 , ASP A:317 , TRP A:403 , CO3 A:503 , HOH A:699 , TYR C:76 , TRP C:77
BINDING SITE FOR RESIDUE GOL A 502
03
AC3
SOFTWARE
ARG A:148 , TYR A:160 , ASP A:211 , GLU A:237 , GLU A:263 , ARG A:284 , HIS A:313 , GLU A:340 , MET A:342 , MG A:501 , GOL A:502 , HOH A:608 , HOH A:699 , HOH A:791
BINDING SITE FOR RESIDUE CO3 A 503
04
AC4
SOFTWARE
GLY A:79 , GLY A:80 , VAL A:82 , ALA A:83 , PRO C:81 , CL C:504
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
HOH A:860 , HOH A:974 , HOH A:975 , HOH A:976 , HOH A:979 , HOH A:980
BINDING SITE FOR RESIDUE MG A 505
06
AC6
SOFTWARE
TYR A:341 , ASP A:349 , HIS A:354 , TYR A:356 , PHE A:358 , HOH A:855 , HOH A:1026
BINDING SITE FOR RESIDUE GOL A 506
07
AC7
SOFTWARE
TYR A:76 , TRP A:77 , ASN C:38 , TYR C:160 , HIS C:213 , GLU C:263 , HIS C:313 , ALA C:315 , ASP C:317 , TRP C:403 , CO3 C:503 , HOH C:659
BINDING SITE FOR RESIDUE GOL C 501
08
AC8
SOFTWARE
ASP C:211 , GLU C:237 , GLU C:263 , CO3 C:503 , HOH C:641 , HOH C:660
BINDING SITE FOR RESIDUE MG C 502
09
AC9
SOFTWARE
ARG C:148 , TYR C:160 , ASP C:211 , GLU C:237 , GLU C:263 , ARG C:284 , HIS C:313 , GLU C:340 , MET C:342 , GOL C:501 , MG C:502 , HOH C:606 , HOH C:641 , HOH C:659
BINDING SITE FOR RESIDUE CO3 C 503
10
BC1
SOFTWARE
CL A:504 , GLY C:79 , GLY C:80 , VAL C:82 , ALA C:83
BINDING SITE FOR RESIDUE CL C 504
11
BC2
SOFTWARE
HOH C:797 , HOH C:824 , HOH C:933 , HOH C:967 , HOH C:968 , HOH C:969
BINDING SITE FOR RESIDUE MG C 505
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MR_MLE_1 (A:86-111,C:86-111)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MR_MLE_1
PS00908
Mandelate racemase / muconate lactonizing enzyme family signature 1.
MAND2_CAUCR
86-111
2
A:86-111
C:86-111
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (301 KB)
Header - Asym.Unit
Biol.Unit 1 (295 KB)
Header - Biol.Unit 1
Biol.Unit 2 (1.1 MB)
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