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3VAG
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (124 KB)
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(1)
Title
:
STRUCTURE OF U2AF65 VARIANT WITH BRU3C2 DNA
Authors
:
J. L. Jenkins, C. L. Kielkopf
Date
:
29 Dec 11 (Deposition) - 13 Feb 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,E,P
Biol. Unit 1: A,B,E,P (1x)
Keywords
:
Rna Splicing Factor, Rna Recognition Motif, Rna Binding Protein, Rna Binding Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Jenkins, A. A. Agrawal, A. Gupta, M. R. Green, C. L. Kielkopf
U2Af65 Adapts To Diverse Pre-Mrna Splice Sites Through Conformational Selection Of Specific And Promiscuous Rna Recognition Motifs.
Nucleic Acids Res. V. 41 3859 2013
[
close entry info
]
Hetero Components
(6, 26)
Info
All Hetero Components
1a: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUa)
1b: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUb)
2a: N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOX... (CPQa)
3a: 1,4-DIETHYLENE DIOXIDE (DIOa)
3b: 1,4-DIETHYLENE DIOXIDE (DIOb)
3c: 1,4-DIETHYLENE DIOXIDE (DIOc)
3d: 1,4-DIETHYLENE DIOXIDE (DIOd)
3e: 1,4-DIETHYLENE DIOXIDE (DIOe)
3f: 1,4-DIETHYLENE DIOXIDE (DIOf)
4a: (DUa)
4b: (DUb)
4c: (DUc)
4d: (DUd)
4e: (DUe)
4f: (DUf)
4g: (DUg)
4h: (DUh)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BRU
2
Mod. Nucleotide
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2
CPQ
1
Ligand/Ion
N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
3
DIO
6
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
4
DU
8
Mod. Residue
5
GOL
2
Ligand/Ion
GLYCEROL
6
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:268 , TYR A:269 , ASN A:271 , GLY A:297 , LEU A:298 , SER A:299
BINDING SITE FOR RESIDUE DIO A 401
02
AC2
SOFTWARE
PRO A:144 , ALA A:148 , GLN A:233 , LEU A:325
BINDING SITE FOR RESIDUE DIO A 402
03
AC3
SOFTWARE
GLN A:180 , ALA A:181 , GLU A:207 , ALA A:318
BINDING SITE FOR RESIDUE DIO A 403
04
AC4
SOFTWARE
LYS A:225 , ARG A:227
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
GLN A:190 , HOH A:527 , DU P:6
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
ARG A:149 , ARG A:150 , GLU A:201 , SER A:281 , HOH A:504 , DU P:7
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
ARG A:228 , TYR A:232 , ILE A:310
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
ILE A:191 , ASN A:192 , GLN A:193 , ASP A:194 , LYS B:329
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
LEU B:285 , LYS B:286 , ALA B:287 , HOH B:543
BINDING SITE FOR RESIDUE DIO B 401
10
BC1
SOFTWARE
GLY B:183 , HIS B:259
BINDING SITE FOR RESIDUE DIO B 402
11
BC2
SOFTWARE
ASN B:268 , LEU B:298 , SER B:299 , HOH B:539
BINDING SITE FOR RESIDUE DIO B 403
12
BC3
SOFTWARE
ARG B:149 , SER B:204 , VAL B:205
BINDING SITE FOR RESIDUE SO4 B 405
13
BC4
SOFTWARE
ARG A:174 , LYS B:225 , ARG B:227 , HOH E:103
BINDING SITE FOR RESIDUE SO4 B 406
14
BC5
SOFTWARE
ARG B:228 , HOH B:548
BINDING SITE FOR RESIDUE SO4 B 407
15
BC6
SOFTWARE
ALA B:181 , ILE B:317 , GLN B:333 , ARG B:334 , HOH B:506
BINDING SITE FOR RESIDUE GOL B 408
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RRM (A:149-231,B:149-231|A:259-336,B:25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
U2AF2_HUMAN
149-231
259-337
385-466
4
A:149-231
B:149-231
A:259-336
B:259-336
-
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.5 (A:143-162 (gaps) | B:143-162 (gaps...)
Exon 1.6 (A:163-201 | B:163-201)
Exon 1.7 (A:202-237 | B:202-237)
Exon 1.8 (A:258-274 | B:258-274)
Exon 1.9 (A:275-315 | B:275-315)
Exon 1.10b (A:316-336 | B:316-336)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10b
7: Boundary 1.10b/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000308924
1
ENSE00001247615
chr19:
56165416-56166519
1104
U2AF2_HUMAN
1-17
17
0
-
-
1.2
ENST00000308924
2
ENSE00001172989
chr19:
56170576-56170711
136
U2AF2_HUMAN
17-62
46
0
-
-
1.3
ENST00000308924
3
ENSE00000953888
chr19:
56171543-56171587
45
U2AF2_HUMAN
62-77
16
0
-
-
1.4
ENST00000308924
4
ENSE00001172973
chr19:
56171882-56171985
104
U2AF2_HUMAN
77-112
36
0
-
-
1.5
ENST00000308924
5
ENSE00001178740
chr19:
56172404-56172555
152
U2AF2_HUMAN
112-162
51
2
A:143-162 (gaps)
B:143-162 (gaps)
30
30
1.6
ENST00000308924
6
ENSE00001172954
chr19:
56173868-56173984
117
U2AF2_HUMAN
163-201
39
2
A:163-201
B:163-201
39
39
1.7
ENST00000308924
7
ENSE00001172945
chr19:
56174972-56175110
139
U2AF2_HUMAN
202-248
47
2
A:202-237
B:202-237
36
36
1.8
ENST00000308924
8
ENSE00000876731
chr19:
56179873-56179952
80
U2AF2_HUMAN
248-274
27
2
A:258-274
B:258-274
17
17
1.9
ENST00000308924
9
ENSE00001178763
chr19:
56180036-56180158
123
U2AF2_HUMAN
275-315
41
2
A:275-315
B:275-315
41
41
1.10b
ENST00000308924
10b
ENSE00001172923
chr19:
56180449-56180547
99
U2AF2_HUMAN
316-348
33
2
A:316-336
B:316-336
21
21
1.11
ENST00000308924
11
ENSE00001178717
chr19:
56180810-56181058
249
U2AF2_HUMAN
349-431
83
0
-
-
1.12
ENST00000308924
12
ENSE00001320361
chr19:
56185300-56186081
782
U2AF2_HUMAN
432-475
44
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (131 KB)
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