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3V9L
Asym. Unit
Info
Asym.Unit (353 KB)
Biol.Unit 1 (347 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE COMPLEXED WITH NAD+
Authors
:
J. J. Tanner, D. Srivastava
Date
:
27 Dec 11 (Deposition) - 02 May 12 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aldehyde Dehydrogenase, Rossmann Fold, Nucleotide Binding, Acting On Aldehyde Or Oxo Group Of Donors, Nad Or Nadp As Acceptor, Mitochondria, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Srivastava, R. K. Singh, M. A. Moxley, M. T. Henzl, D. F. Becker, J. J. Tanner
The Three-Dimensional Structural Basis Of Type Ii Hyperprolinemia.
J. Mol. Biol. V. 420 176 2012
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:421 , ASN A:422 , TYR A:428 , GLU A:430 , PRO B:459 , ASP B:461 , LYS B:462
BINDING SITE FOR RESIDUE GOL A 564
2
AC2
SOFTWARE
ARG A:408 , SER A:409 , PRO A:411 , HOH A:918 , ASP B:77 , TYR B:96 , ASP B:265 , THR B:268
BINDING SITE FOR RESIDUE GOL A 565
3
AC3
SOFTWARE
ILE A:207 , SER A:208 , LYS A:233 , GLY A:266 , PRO A:267 , GLY A:270 , PHE A:284 , SER A:287 , THR A:290 , LEU A:294 , HOH A:670 , HOH A:973 , HOH A:1044
BINDING SITE FOR RESIDUE NAD A 1518
4
AC4
SOFTWARE
ILE B:207 , SER B:208 , LYS B:233 , GLY B:266 , PRO B:267 , GLY B:270 , PHE B:284 , GLY B:286 , SER B:287 , THR B:290 , HIS B:293 , LEU B:294 , HOH B:952 , HOH B:1045 , HOH B:1059
BINDING SITE FOR RESIDUE NAD B 1517
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:313-320,B:313-320)
2: ALDEHYDE_DEHYDR_CYS (A:341-352,B:341-352)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL4A1_MOUSE
312-319
2
A:313-320
B:313-320
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL4A1_MOUSE
340-351
2
A:341-352
B:341-352
[
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Exons
(15, 29)
Info
All Exons
Exon 1.1a (- | B:18-21)
Exon 1.2a (A:30-52 | B:21-52)
Exon 1.2c (A:53-83 | B:53-83)
Exon 1.3 (A:84-99 | B:84-99)
Exon 1.4a (A:100-151 | B:100-151)
Exon 1.5 (A:152-201 | B:152-201)
Exon 1.6 (A:202-226 | B:202-226)
Exon 1.7 (A:227-289 | B:227-289)
Exon 1.8a (A:289-314 | B:289-314)
Exon 1.8c (A:314-379 | B:314-379)
Exon 1.9 (A:380-395 | B:380-395)
Exon 1.10 (A:396-446 | B:396-446)
Exon 1.11 (A:447-487 | B:447-487)
Exon 1.12 (A:487-527 | B:487-527)
Exon 1.13b (A:527-563 | B:527-563)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.2c
04: Boundary 1.2c/1.3
05: Boundary 1.3/1.4a
06: Boundary 1.4a/1.5
07: Boundary 1.5/1.6
08: Boundary 1.6/1.7
09: Boundary 1.7/1.8a
10: Boundary 1.8a/1.8c
11: Boundary 1.8c/1.9
12: Boundary 1.9/1.10
13: Boundary 1.10/1.11
14: Boundary 1.11/1.12
15: Boundary 1.12/1.13b
16: Boundary 1.13b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000039818
1a
ENSMUSE00000802869
chr4:
139178781-139179112
332
AL4A1_MOUSE
1-20
20
1
-
B:18-21
-
4
1.2a
ENSMUST00000039818
2a
ENSMUSE00000340055
chr4:
139189630-139189723
94
AL4A1_MOUSE
20-51
32
2
A:30-52
B:21-52
23
32
1.2c
ENSMUST00000039818
2c
ENSMUSE00000280876
chr4:
139189812-139189904
93
AL4A1_MOUSE
52-82
31
2
A:53-83
B:53-83
31
31
1.3
ENSMUST00000039818
3
ENSMUSE00000280869
chr4:
139190579-139190626
48
AL4A1_MOUSE
83-98
16
2
A:84-99
B:84-99
16
16
1.4a
ENSMUST00000039818
4a
ENSMUSE00000280862
chr4:
139191304-139191459
156
AL4A1_MOUSE
99-150
52
2
A:100-151
B:100-151
52
52
1.5
ENSMUST00000039818
5
ENSMUSE00000181719
chr4:
139192874-139193023
150
AL4A1_MOUSE
151-200
50
2
A:152-201
B:152-201
50
50
1.6
ENSMUST00000039818
6
ENSMUSE00000181717
chr4:
139193101-139193175
75
AL4A1_MOUSE
201-225
25
2
A:202-226
B:202-226
25
25
1.7
ENSMUST00000039818
7
ENSMUSE00000181716
chr4:
139194290-139194477
188
AL4A1_MOUSE
226-288
63
2
A:227-289
B:227-289
63
63
1.8a
ENSMUST00000039818
8a
ENSMUSE00000280831
chr4:
139196528-139196601
74
AL4A1_MOUSE
288-313
26
2
A:289-314
B:289-314
26
26
1.8c
ENSMUST00000039818
8c
ENSMUSE00000343113
chr4:
139197992-139198188
197
AL4A1_MOUSE
313-378
66
2
A:314-379
B:314-379
66
66
1.9
ENSMUST00000039818
9
ENSMUSE00000383610
chr4:
139198429-139198476
48
AL4A1_MOUSE
379-394
16
2
A:380-395
B:380-395
16
16
1.10
ENSMUST00000039818
10
ENSMUSE00000345564
chr4:
139199305-139199457
153
AL4A1_MOUSE
395-445
51
2
A:396-446
B:396-446
51
51
1.11
ENSMUST00000039818
11
ENSMUSE00000346494
chr4:
139200027-139200148
122
AL4A1_MOUSE
446-486
41
2
A:447-487
B:447-487
41
41
1.12
ENSMUST00000039818
12
ENSMUSE00000181721
chr4:
139200894-139201012
119
AL4A1_MOUSE
486-526
41
2
A:487-527
B:487-527
41
41
1.13b
ENSMUST00000039818
13b
ENSMUSE00000332832
chr4:
139204073-139205605
1533
AL4A1_MOUSE
526-562
37
2
A:527-563
B:527-563
37
37
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3v9la_ (A:)
1b: SCOP_d3v9lb_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d3v9la_
A:
1b
d3v9lb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (353 KB)
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Biol.Unit 1 (347 KB)
Header - Biol.Unit 1
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