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3V9C
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
TYPE-2 CU-DEPLETED FUNGUS LACCASE FROM TRAMETES HIRSUTA AT LOW DOSE OF IONIZATION RADIATION
Authors
:
K. M. Polyakov, T. V. Fedorova, S. A. Kurzeev, A. N. Popov, V. S. Lamzin, O. V. Koroleva
Date
:
26 Dec 11 (Deposition) - 22 Feb 12 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
4-Copper Protein, Metal-Binding, Type-2 Cu-Depleted, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Polyakov, T. V. Fedorova, S. A. Kurzeev, A. N. Popov, V. S. Lamzin, O. V. Koroleva
Crystal Structure Of T2-Depleted Fungal Laccase From Trametes Hirsuta 072 At Low And High Dose Of Ionization Radiation
To Be Published
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5a: OXYGEN MOLECULE (OXYa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CU
4
Ligand/Ion
COPPER (II) ION
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
OXY
1
Ligand/Ion
OXYGEN MOLECULE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:111 , HIS A:398 , HIS A:400 , HIS A:452 , OXY A:1000 , CU A:1502
BINDING SITE FOR RESIDUE CU A 1500
02
AC2
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:109 , HIS A:111 , HIS A:398 , HIS A:400 , HIS A:452 , HIS A:454 , CU A:1500 , CU A:1501 , CU A:1502
BINDING SITE FOR RESIDUE OXY A 1000
03
AC3
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:109 , HIS A:454 , OXY A:1000 , CU A:1502
BINDING SITE FOR RESIDUE CU A 1501
04
AC4
SOFTWARE
HIS A:395 , CYS A:453 , HIS A:458 , PHE A:463
BINDING SITE FOR RESIDUE CU A 1503
05
AC5
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:398 , HIS A:400 , OXY A:1000 , CU A:1500 , CU A:1501
BINDING SITE FOR RESIDUE CU A 1502
06
AC6
SOFTWARE
GLN A:23 , ASN A:54 , MET A:57 , ALA A:155 , LEU A:158 , HOH A:812 , HOH A:1004 , NAG A:1505
BINDING SITE FOR RESIDUE NAG A 1504
07
AC7
SOFTWARE
ARG A:22 , HIS A:153 , THR A:154 , ALA A:155 , LEU A:158 , HOH A:1065 , HOH A:1245 , HOH A:1271 , HOH A:1276 , NAG A:1504 , BMA A:1512
BINDING SITE FOR RESIDUE NAG A 1505
08
AC8
SOFTWARE
PHE A:20 , HOH A:601 , HOH A:807 , HOH A:1285 , NAG A:1505 , MAN A:1513 , MAN A:1515
BINDING SITE FOR RESIDUE BMA A 1512
09
AC9
SOFTWARE
VAL A:5 , PHE A:20 , SER A:21 , HOH A:603 , HOH A:839 , HOH A:1035 , HOH A:1036 , HOH A:1187 , BMA A:1512 , MAN A:1514 , MAN A:1520
BINDING SITE FOR RESIDUE MAN A 1513
10
BC1
SOFTWARE
PRO A:4 , ALA A:14 , SER A:21 , GLN A:23 , ASN A:39 , ASP A:42 , HOH A:615 , HOH A:1004 , HOH A:1247 , HOH A:1386 , MAN A:1513
BINDING SITE FOR RESIDUE MAN A 1514
11
BC2
SOFTWARE
ALA A:6 , BMA A:1512
BINDING SITE FOR RESIDUE MAN A 1515
12
BC3
SOFTWARE
ARG A:43 , GLN A:45 , HOH A:1391 , MAN A:1513
BINDING SITE FOR RESIDUE MAN A 1520
13
BC4
SOFTWARE
GLY A:215 , ASN A:217 , GLN A:252 , LYS A:298 , HOH A:1064 , HOH A:1202 , NAG A:1507
BINDING SITE FOR RESIDUE NAG A 1506
14
BC5
SOFTWARE
LYS A:157 , LEU A:158 , GLY A:159 , VAL A:297 , NAG A:1506 , BMA A:1508
BINDING SITE FOR RESIDUE NAG A 1507
15
BC6
SOFTWARE
LYS A:157 , HOH A:1368 , NAG A:1507
BINDING SITE FOR RESIDUE BMA A 1508
16
BC7
SOFTWARE
ASN A:333 , SER A:335 , ASN A:336 , PHE A:338 , LYS A:475
BINDING SITE FOR RESIDUE NAG A 1509
17
BC8
SOFTWARE
SER A:319 , SER A:383 , PRO A:385 , ASN A:436 , HOH A:764 , HOH A:854 , NAG A:1511
BINDING SITE FOR RESIDUE NAG A 1510
18
BC9
SOFTWARE
ASN A:327 , HOH A:853 , NAG A:1510
BINDING SITE FOR RESIDUE NAG A 1511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3v9ca1 (A:1-130)
1b: SCOP_d3v9ca2 (A:131-300)
1c: SCOP_d3v9ca3 (A:301-499)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Trametes hirsuta [TaxId: 5327]
(3)
1a
d3v9ca1
A:1-130
1b
d3v9ca2
A:131-300
1c
d3v9ca3
A:301-499
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (98 KB)
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Header - Biol.Unit 1
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