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3V96
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
COMPLEX OF MATRIX METALLOPROTEINASE-10 CATALYTIC DOMAIN (MMP-10CD) WITH TISSUE INHIBITOR OF METALLOPROTEINASES-1 (TIMP-1)
Authors
:
J. Batra, A. S. Soares, E. S. Radisky
Date
:
23 Dec 11 (Deposition) - 28 Mar 12 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Metzincin, Ob-Fold, Metalloproteinase, Protease Inhibitor, Hydrolase Inhibitor-Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Batra, J. Robinson, A. S. Soares, A. P. Fields, D. C. Radisky, E. S. Radisky
Matrix Metalloproteinase-10 (Mmp-10) Interaction With Tissu Inhibitors Of Metalloproteinases Timp-1 And Timp-2: Binding Studies And Crystal Structure.
J. Biol. Chem. V. 287 15935 2012
[
close entry info
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:59 , ARG A:162 , HIS A:163 , HOH A:351 , HOH A:371
BINDING SITE FOR RESIDUE PO4 A 201
2
AC2
SOFTWARE
SER A:100 , VAL A:102 , GLU A:156 , LYS A:157 , HOH A:370
BINDING SITE FOR RESIDUE PO4 A 202
3
AC3
SOFTWARE
CYS A:1 , HIS B:217 , HIS B:221 , HIS B:227
BINDING SITE FOR RESIDUE ZN B 301
4
AC4
SOFTWARE
HIS B:167 , ASP B:169 , HIS B:182 , HIS B:195
BINDING SITE FOR RESIDUE ZN B 302
5
AC5
SOFTWARE
ASP B:174 , GLY B:175 , GLY B:177 , SER B:179 , ASP B:197 , GLU B:200
BINDING SITE FOR RESIDUE CA B 303
6
AC6
SOFTWARE
ASP B:157 , GLY B:189 , TYR B:191 , ASP B:193 , HOH B:447 , HOH B:449
BINDING SITE FOR RESIDUE CA B 304
7
AC7
SOFTWARE
ASP B:123 , ASP B:198 , GLU B:200
BINDING SITE FOR RESIDUE CA B 305
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036139 (E142Q, chain B, )
2: VAR_MMP10_HUMAN_CCDS8321_1_01 (E142Q, chain B, )
3: VAR_020952 (F226L, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036139
E
142
Q
MMP10_HUMAN
Unclassified
---
B
E
142
Q
2
CancerSNP
VAR_MMP10_HUMAN_CCDS8321_1_01
*
E
142
Q
MMP10_HUMAN
Disease (Breast cancer)
---
B
E
142
Q
3
UniProt
VAR_020952
F
226
L
MMP10_HUMAN
Polymorphism
17860971
B
F
226
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NTR (A:1-124)
2: TIMP (A:1-13)
3: ZINC_PROTEASE (B:214-223)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTR
PS50189
NTR domain profile.
TIMP1_HUMAN
24-147
1
A:1-124
2
TIMP
PS00288
Tissue inhibitors of metalloproteinases signature.
TIMP1_HUMAN
24-36
1
A:1-13
3
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP10_HUMAN
214-223
1
B:214-223
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.3 (A:1-18)
Exon 1.4a (A:18-44 (gaps))
Exon 1.4d (A:45-87 (gaps))
Exon 1.4g (A:87-128)
Exon 1.5b (A:129-178)
Exon 2.2 (B:105-116)
Exon 2.3 (B:116-166)
Exon 2.4 (B:166-208)
Exon 2.5 (B:208-263)
Exon 2.6 (B:263-263)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3
02: Boundary 1.3/1.4a
03: Boundary 1.4a/1.4d
04: Boundary 1.4d/1.4g
05: Boundary 1.4g/1.5b
06: Boundary 1.5b/-
07: Boundary 2.1/2.2
08: Boundary 2.2/2.3
09: Boundary 2.3/2.4
10: Boundary 2.4/2.5
11: Boundary 2.5/2.6
12: Boundary 2.6/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000218388
1a
ENSE00001472535
X:47441712-47441873
162
TIMP1_HUMAN
-
0
0
-
-
1.3
ENST00000218388
3
ENSE00002188016
X:47442807-47442935
129
TIMP1_HUMAN
1-41
41
1
A:1-18
18
1.4a
ENST00000218388
4a
ENSE00001687541
X:47444335-47444414
80
TIMP1_HUMAN
41-67
27
1
A:18-44 (gaps)
27
1.4d
ENST00000218388
4d
ENSE00002194942
X:47444604-47444730
127
TIMP1_HUMAN
68-110
43
1
A:45-87 (gaps)
43
1.4g
ENST00000218388
4g
ENSE00001622276
X:47444942-47445066
125
TIMP1_HUMAN
110-151
42
1
A:87-128
42
1.5b
ENST00000218388
5b
ENSE00001472498
X:47445920-47446188
269
TIMP1_HUMAN
152-207
56
1
A:129-178
50
2.1
ENST00000279441
1
ENSE00000993214
chr11:
102651359-102651218
142
MMP10_HUMAN
1-35
35
0
-
-
2.2
ENST00000279441
2
ENSE00000993200
chr11:
102650476-102650235
242
MMP10_HUMAN
36-116
81
1
B:105-116
12
2.3
ENST00000279441
3
ENSE00001758252
chr11:
102650092-102649944
149
MMP10_HUMAN
116-166
51
1
B:116-166
51
2.4
ENST00000279441
4
ENSE00000993192
chr11:
102649480-102649355
126
MMP10_HUMAN
166-208
43
1
B:166-208
43
2.5
ENST00000279441
5
ENSE00001706030
chr11:
102647507-102647343
165
MMP10_HUMAN
208-263
56
1
B:208-263
56
2.6
ENST00000279441
6
ENSE00000993219
chr11:
102647155-102647011
145
MMP10_HUMAN
263-311
49
1
B:263-263
1
2.7
ENST00000279441
7
ENSE00000993209
chr11:
102646052-102645919
134
MMP10_HUMAN
311-356
46
0
-
-
2.8
ENST00000279441
8
ENSE00001692235
chr11:
102643737-102643578
160
MMP10_HUMAN
356-409
54
0
-
-
2.9
ENST00000279441
9
ENSE00000993181
chr11:
102642846-102642743
104
MMP10_HUMAN
409-444
36
0
-
-
2.10
ENST00000279441
10
ENSE00000993208
chr11:
102641624-102641245
380
MMP10_HUMAN
444-476
33
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3v96a_ (A:)
2a: SCOP_d3v96b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Tissue inhibitor of metalloproteinases, TIMP
(13)
Protein domain
:
TIMP-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3v96a_
A:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(32)
2a
d3v96b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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