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3V83
Biol. Unit 1
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (233 KB)
Biol.Unit 2 (234 KB)
Biol.Unit 3 (234 KB)
Biol.Unit 4 (234 KB)
Biol.Unit 5 (237 KB)
Biol.Unit 6 (235 KB)
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Title
:
THE 2.1 ANGSTROM CRYSTAL STRUCTURE OF DIFERRIC HUMAN TRANSFERRIN
Authors
:
N. Noinaj, A. Steere, A. B. Mason, S. K. Buchanan
Date
:
22 Dec 11 (Deposition) - 15 Feb 12 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Iron Binding Domain, Iron Carrier/Transporter, Transferrin Receptor, Serum, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Noinaj, N. C. Easley, M. Oke, N. Mizuno, J. Gumbart, E. Boura, A. N. Steere, O. Zak, P. Aisen, E. Tajkhorshid, R. W. Evans, A. R. Gorringe, A. B. Mason, A. C. Steven, S. K. Buchanan
Structural Basis For Iron Piracy By Pathogenic Neisseria.
Nature V. 483 53 2012
[
close entry info
]
Hetero Components
(3, 10)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
1c: BICARBONATE ION (BCTc)
1d: BICARBONATE ION (BCTd)
1e: BICARBONATE ION (BCTe)
1f: BICARBONATE ION (BCTf)
1g: BICARBONATE ION (BCTg)
1h: BICARBONATE ION (BCTh)
1i: BICARBONATE ION (BCTi)
1j: BICARBONATE ION (BCTj)
1k: BICARBONATE ION (BCTk)
1l: BICARBONATE ION (BCTl)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
2g: FE (III) ION (FEg)
2h: FE (III) ION (FEh)
2i: FE (III) ION (FEi)
2j: FE (III) ION (FEj)
2k: FE (III) ION (FEk)
2l: FE (III) ION (FEl)
3a: HEXAETHYLENE GLYCOL (P6Ga)
3b: HEXAETHYLENE GLYCOL (P6Gb)
3c: HEXAETHYLENE GLYCOL (P6Gc)
3d: HEXAETHYLENE GLYCOL (P6Gd)
3e: HEXAETHYLENE GLYCOL (P6Ge)
3f: HEXAETHYLENE GLYCOL (P6Gf)
3g: HEXAETHYLENE GLYCOL (P6Gg)
3h: HEXAETHYLENE GLYCOL (P6Gh)
3i: HEXAETHYLENE GLYCOL (P6Gi)
3j: HEXAETHYLENE GLYCOL (P6Gj)
3k: HEXAETHYLENE GLYCOL (P6Gk)
3l: HEXAETHYLENE GLYCOL (P6Gl)
3m: HEXAETHYLENE GLYCOL (P6Gm)
3n: HEXAETHYLENE GLYCOL (P6Gn)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4ag: SULFATE ION (SO4ag)
4ah: SULFATE ION (SO4ah)
4ai: SULFATE ION (SO4ai)
4aj: SULFATE ION (SO4aj)
4ak: SULFATE ION (SO4ak)
4al: SULFATE ION (SO4al)
4am: SULFATE ION (SO4am)
4an: SULFATE ION (SO4an)
4ao: SULFATE ION (SO4ao)
4ap: SULFATE ION (SO4ap)
4aq: SULFATE ION (SO4aq)
4ar: SULFATE ION (SO4ar)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
2
Ligand/Ion
BICARBONATE ION
2
FE
-1
Ligand/Ion
FE (III) ION
3
P6G
3
Ligand/Ion
HEXAETHYLENE GLYCOL
4
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: HC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:63 , TYR A:95 , THR A:120 , ARG A:124 , SER A:125 , ALA A:126 , GLY A:127 , TYR A:188 , HIS A:249 , FE A:703
BINDING SITE FOR RESIDUE BCT A 701
02
AC2
SOFTWARE
ASP A:392 , TYR A:426 , THR A:452 , ARG A:456 , THR A:457 , ALA A:458 , GLY A:459 , TYR A:517 , FE A:704
BINDING SITE FOR RESIDUE BCT A 702
03
AC3
SOFTWARE
ASP A:63 , TYR A:95 , TYR A:188 , HIS A:249 , BCT A:701
BINDING SITE FOR RESIDUE FE A 703
04
AC4
SOFTWARE
ASP A:392 , TYR A:426 , TYR A:517 , HIS A:585 , BCT A:702
BINDING SITE FOR RESIDUE FE A 704
05
AC5
SOFTWARE
HIS A:598 , LYS A:640 , LEU A:641 , HIS A:642
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
LYS A:78 , SER A:255 , MET A:256 , HOH A:986 , HOH C:1019
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
GLN A:108 , THR A:231 , ARG A:232 , HOH A:1088 , HOH A:1148
BINDING SITE FOR RESIDUE SO4 A 707
08
AC8
SOFTWARE
GLN A:92 , TYR A:238 , LYS A:239
BINDING SITE FOR RESIDUE SO4 A 708
09
AC9
SOFTWARE
GLN A:20 , ARG A:23 , ASP A:24
BINDING SITE FOR RESIDUE SO4 A 709
10
BC1
SOFTWARE
LYS A:41 , LYS A:42 , ASP A:47 , GLU A:56 , HOH A:903 , GLN D:172
BINDING SITE FOR RESIDUE P6G A 710
11
BC2
SOFTWARE
LEU A:46 , ARG A:50 , CYS A:161
BINDING SITE FOR RESIDUE P6G A 711
12
BC3
SOFTWARE
CYS A:339 , LYS A:365 , LYS A:599 , GLN A:603 , HOH A:1097 , GLU E:357
BINDING SITE FOR RESIDUE P6G A 712
13
HC6
SOFTWARE
ASN A:645 , SER E:501
BINDING SITE FOR RESIDUE SO4 E 713
[
close Site info
]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_034569 (R23L, chain A, )
02: VAR_029280 (S36R, chain A, )
03: VAR_034570 (A57V, chain A, )
04: VAR_038810 (D58N, chain A, )
05: VAR_011997 (G123S, chain A, )
06: VAR_011998 (G258S, chain A, )
07: VAR_007544 (D277G, chain A, )
08: VAR_007545 (H300R, chain A, )
09: VAR_011999 (W358C, chain A, )
10: VAR_058199 (V429V, chain A, )
11: VAR_012997 (A458P, chain A, )
12: VAR_034571 (G543V, chain A, )
13: VAR_012000 (P570S, chain A, )
14: VAR_012001 (T626P, chain A, )
15: VAR_012998 (K627E, chain A, )
16: VAR_012999 (G652E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_034569
R
42
L
TRFE_HUMAN
Polymorphism
41298293
A
R
23
L
02
UniProt
VAR_029280
S
55
R
TRFE_HUMAN
Polymorphism
8177318
A
S
36
R
03
UniProt
VAR_034570
A
76
V
TRFE_HUMAN
Polymorphism
41298977
A
A
57
V
04
UniProt
VAR_038810
D
77
N
TRFE_HUMAN
Disease (ATRAF)
---
A
D
58
N
05
UniProt
VAR_011997
G
142
S
TRFE_HUMAN
Polymorphism
1799830
A
G
123
S
06
UniProt
VAR_011998
G
277
S
TRFE_HUMAN
Polymorphism
1799899
A
G
258
S
07
UniProt
VAR_007544
D
296
G
TRFE_HUMAN
Polymorphism
8177238
A
D
277
G
08
UniProt
VAR_007545
H
319
R
TRFE_HUMAN
Polymorphism
41295774
A
H
300
R
09
UniProt
VAR_011999
W
377
C
TRFE_HUMAN
Polymorphism
1804498
A
W
358
C
10
UniProt
VAR_058199
I
448
V
TRFE_HUMAN
Polymorphism
2692696
A
V
429
V
11
UniProt
VAR_012997
A
477
P
TRFE_HUMAN
Disease (ATRAF)
---
A
A
458
P
12
UniProt
VAR_034571
G
562
V
TRFE_HUMAN
Polymorphism
41296590
A
G
543
V
13
UniProt
VAR_012000
P
589
S
TRFE_HUMAN
Polymorphism
1049296
A
P
570
S
14
UniProt
VAR_012001
T
645
P
TRFE_HUMAN
Polymorphism
1130537
A
T
626
P
15
UniProt
VAR_012998
K
646
E
TRFE_HUMAN
Polymorphism
---
A
K
627
E
16
UniProt
VAR_012999
G
671
E
TRFE_HUMAN
Polymorphism
121918677
A
G
652
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: TRANSFERRIN_LIKE_4 (A:6-328,A:342-664)
2: TRANSFERRIN_LIKE_1 (A:95-104)
3: TRANSFERRIN_LIKE_2 (A:188-204,A:517-532)
4: TRANSFERRIN_LIKE_3 (A:222-252,A:558-588)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFE_HUMAN
25-347
361-683
2
A:6-328
-
-
-
-
-
A:342-664
-
-
-
-
-
2
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFE_HUMAN
114-123
1
A:95-104
-
-
-
-
-
3
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFE_HUMAN
207-223
536-551
2
A:188-204
-
-
-
-
-
A:517-532
-
-
-
-
-
4
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFE_HUMAN
241-271
577-607
2
A:222-252
-
-
-
-
-
A:558-588
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (233 KB)
Header - Biol.Unit 1
Biol.Unit 2 (234 KB)
Header - Biol.Unit 2
Biol.Unit 3 (234 KB)
Header - Biol.Unit 3
Biol.Unit 4 (234 KB)
Header - Biol.Unit 4
Biol.Unit 5 (237 KB)
Header - Biol.Unit 5
Biol.Unit 6 (235 KB)
Header - Biol.Unit 6
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