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3V64
Asym. Unit
Info
Asym.Unit (363 KB)
Biol.Unit 1 (354 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGRIN AND LRP4
Authors
:
Y. Zong, B. Zhang, S. Gu, K. Lee, J. Zhou, G. Yao, D. Figueiedo, K. Perry, L R. Jin
Date
:
18 Dec 11 (Deposition) - 25 Apr 12 (Release) - 01 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta Propeller, Laminin-G, Signaling, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zong, B. Zhang, S. Gu, K. Lee, J. Zhou, G. Yao, D. Figueiredo, K. Perry L. Mei, R. Jin
Structural Basis Of Agrin-Lrp4-Musk Signaling.
Genes Dev. V. 26 247 2012
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:496 , ASN C:498 , SER C:500
BINDING SITE FOR RESIDUE NAG C 801
02
AC2
SOFTWARE
ASN C:719 , TYR C:720
BINDING SITE FOR RESIDUE NAG C 802
03
AC3
SOFTWARE
ASN C:706 , GLY C:707 , TYR C:720
BINDING SITE FOR RESIDUE CA C 803
04
AC4
SOFTWARE
ALA C:543 , HIS C:544 , PHE C:728
BINDING SITE FOR RESIDUE PO4 C 804
05
AC5
SOFTWARE
ARG C:478 , TRP C:520 , VAL C:521 , PRO C:696 , ALA C:697 , GLY C:698
BINDING SITE FOR RESIDUE PO4 C 805
06
AC6
SOFTWARE
ASP A:1820 , LEU A:1837 , GLN A:1887 , ASP A:1889
BINDING SITE FOR RESIDUE CA A 2001
07
AC7
SOFTWARE
ASN A:1774 , ASN A:1794 , HIS A:1795 , ILE A:1812 , VAL A:1925
BINDING SITE FOR RESIDUE PO4 A 2002
08
AC8
SOFTWARE
ASP B:1820 , LEU B:1837 , GLN B:1887 , ASP B:1889
BINDING SITE FOR RESIDUE CA B 2001
09
AC9
SOFTWARE
SER B:1793 , ASN B:1794 , HIS B:1795 , PHE B:1796 , VAL B:1925 , GLY B:1926
BINDING SITE FOR RESIDUE PO4 B 2002
10
BC1
SOFTWARE
CYS D:702 , ASN D:706 , CYS D:709 , HOH D:927
BINDING SITE FOR RESIDUE CA D 801
11
BC2
SOFTWARE
VAL D:487 , ASP D:490 , GLU D:511
BINDING SITE FOR RESIDUE CA D 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 18)
Info
All PROSITE Patterns/Profiles
1: EGF_2 (-|C:418-433,D:418-433|C:722-736,D:...)
2: ASX_HYDROXYL (C:409-420,D:409-420)
3: LDLRB (C:480-522,D:480-522|C:523-565,D:52...)
4: LAM_G_DOMAIN (-|-|A:1784-1945,B:1784-1945)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
LRP4_RAT
378-393
418-433
722-736
4
-
C:418-433
D:418-433
C:722-736
D:722-736
2
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
LRP4_RAT
409-420
2
C:409-420
D:409-420
3
LDLRB
PS51120
LDL-receptor class B (LDLRB) repeat profile.
LRP4_RAT
480-522
523-565
566-609
610-652
653-693
785-827
828-870
871-914
915-957
958-998
1093-1135
1136-1178
1179-1222
1223-1264
1265-1306
1397-1439
1440-1482
1483-1526
1527-1568
1569-1610
10
C:480-522
D:480-522
C:523-565
D:523-565
C:566-609
D:566-609
C:610-652
D:610-652
C:653-693
D:653-693
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
4
LAM_G_DOMAIN
PS50025
Laminin G domain profile.
AGRIN_RAT
1263-1439
1526-1713
1784-1956
2
-
-
A:1784-1945
B:1784-1945
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3v64a_ (A:)
1b: SCOP_d3v64b_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Laminin G-like module
(37)
Protein domain
:
automated matches
(7)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d3v64a_
A:
1b
d3v64b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Protein & NOT Site
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Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (363 KB)
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