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3V62
Biol. Unit 1
Info
Asym.Unit (127 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (61 KB)
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(1)
Title
:
STRUCTURE OF THE S. CEREVISIAE SRS2 C-TERMINAL DOMAIN IN COMPLEX WITH PCNA CONJUGATED TO SUMO ON LYSINE 164
Authors
:
A. A. Armstrong, F. Mohideen, C. D. Lima
Date
:
18 Dec 11 (Deposition) - 29 Feb 12 (Release) - 03 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Ubiquitin-Like Protein Pcna, Post-Translational Modification Dna Replication Dna Damage Response, Srs2, Nem Modification On Pcna Cys22 And Cys81 Reductive Methylation Of All Lysine Residues On Smt3, Nuclear, Protein Binding-Dna Binding Protein Complex
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Reference
:
A. A. Armstrong, F. Mohideen, C. D. Lima
Recognition Of Sumo-Modified Pcna Requires Tandem Receptor Motifs In Srs2.
Nature V. 483 59 2012
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1b: N-DIMETHYL-LYSINE (MLYb)
1c: N-DIMETHYL-LYSINE (MLYc)
1d: N-DIMETHYL-LYSINE (MLYd)
1e: N-DIMETHYL-LYSINE (MLYe)
1f: N-DIMETHYL-LYSINE (MLYf)
1g: N-DIMETHYL-LYSINE (MLYg)
1h: N-DIMETHYL-LYSINE (MLYh)
1i: N-DIMETHYL-LYSINE (MLYi)
1j: N-DIMETHYL-LYSINE (MLYj)
1k: N-DIMETHYL-LYSINE (MLYk)
1l: N-DIMETHYL-LYSINE (MLYl)
2a: N-ETHYLMALEIMIDE (NEQa)
2b: N-ETHYLMALEIMIDE (NEQb)
2c: N-ETHYLMALEIMIDE (NEQc)
2d: N-ETHYLMALEIMIDE (NEQd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
MLY
6
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
NEQ
2
Ligand/Ion
N-ETHYLMALEIMIDE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:18 , PHE B:19 , CYS B:22 , VAL B:48
BINDING SITE FOR RESIDUE NEQ B 301
2
AC2
SOFTWARE
LYS B:77 , CYS B:81 , TYR B:114 , GLN E:153 , LEU E:154
BINDING SITE FOR RESIDUE NEQ B 302
3
AC3
SOFTWARE
SER B:138 , LYS B:196 , ARG B:224
BINDING SITE FOR RESIDUE SO4 B 303
4
AC4
SOFTWARE
LYS B:146 , ARG B:149
BINDING SITE FOR RESIDUE SO4 B 304
5
AC6
SOFTWARE
GLN B:153 , LEU B:154 , LYS E:77 , CYS E:81 , TYR E:114
BINDING SITE FOR RESIDUE NEQ E 302
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:22-98)
2: PCNA_1 (B:34-57)
3: PCNA_2 (B:61-79)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
SMT3_YEAST
22-98
1
A:22-98
-
2
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_YEAST
34-57
1
B:34-57
-
3
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_YEAST
61-79
1
B:61-79
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3v62a_ (A:)
1b: SCOP_d3v62d_ (D:)
2a: SCOP_d3v62b1 (B:1-126)
2b: SCOP_d3v62b2 (B:127-255)
2c: SCOP_d3v62e1 (E:1-126)
2d: SCOP_d3v62e2 (E:127-255)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(3)
1a
d3v62a_
A:
1b
d3v62d_
D:
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
automated matches
(10)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(4)
2a
d3v62b1
B:1-126
2b
d3v62b2
B:127-255
2c
d3v62e1
E:1-126
2d
d3v62e2
E:127-255
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (127 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
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