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3V57
Biol. Unit 1
Info
Asym.Unit (132 KB)
Biol.Unit 1 (184 KB)
Biol.Unit 2 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE B-PHYCOERYTHRIN FROM THE RED ALGAE PORPHYRIDIUM CRUENTUM AT PH8
Authors
:
A. Camara-Artigas
Date
:
16 Dec 11 (Deposition) - 03 Oct 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (3x)
Biol. Unit 2: C,D (3x)
Keywords
:
Globin-Like, Photosynthesis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Camara-Artigas, J. Bacarizo, M. Andujar-Sanchez, E. Ortiz-Salmeron, C. Mesa-Valle, C. Cuadri, J. M. Martin-Garcia, S. Martinez-Rodriguez, T. Mazzuca-Sobczuk, M. J. Ibanez, J. P. Allen
Ph-Dependent Structural Conformations Of B-Phycoerythrin From Porphyridium Cruentum
Febs J. V. 279 3680 2012
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: N-METHYL ASPARAGINE (MENa)
1b: N-METHYL ASPARAGINE (MENb)
2a: PHYCOERYTHROBILIN (PEBa)
2b: PHYCOERYTHROBILIN (PEBb)
2c: PHYCOERYTHROBILIN (PEBc)
2d: PHYCOERYTHROBILIN (PEBd)
2e: PHYCOERYTHROBILIN (PEBe)
2f: PHYCOERYTHROBILIN (PEBf)
2g: PHYCOERYTHROBILIN (PEBg)
2h: PHYCOERYTHROBILIN (PEBh)
2i: PHYCOERYTHROBILIN (PEBi)
2j: PHYCOERYTHROBILIN (PEBj)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
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Label:
No.
Name
Count
Type
Full Name
1
MEN
3
Mod. Amino Acid
N-METHYL ASPARAGINE
2
PEB
15
Ligand/Ion
PHYCOERYTHROBILIN
3
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:60 , ALA A:72 , GLY A:73 , LYS A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , TYR A:89 , LEU A:92 , TRP A:108 , TYR A:117 , LEU A:120 , LEU A:122 , ALA A:126 , TYR A:127 , HOH A:247 , HOH A:286 , ILE B:67 , THR B:75 , ASN B:76 , MET B:79 , HOH B:375
BINDING SITE FOR RESIDUE PEB A 201
2
AC2
SOFTWARE
LYS A:43 , ASN A:47 , ALA A:50 , VAL A:51 , GLU A:54 , ARG A:137 , CYS A:139 , ARG A:142 , ASP A:143 , HOH A:168 , HOH A:198 , HOH A:206 , HOH A:385 , THR B:143 , GLY B:156 , ASP B:157 , CYS B:158 , THR B:159 , PEB B:204 , HOH B:211
BINDING SITE FOR RESIDUE PEB A 202
3
AC3
SOFTWARE
LEU A:122 , PRO A:123 , THR A:124 , HOH A:171 , HOH A:437 , PRO C:123 , THR C:124 , HOH C:176 , HOH C:467
BINDING SITE FOR RESIDUE SO4 A 165
4
AC4
SOFTWARE
PRO A:141 , HOH A:389 , LYS B:36 , ASP B:157 , PEB B:204 , HOH B:236
BINDING SITE FOR RESIDUE SO4 A 166
5
AC5
SOFTWARE
MET B:59 , MEN B:72 , CYS B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , VAL B:122 , PRO B:123 , SER B:126 , SER B:127 , HOH B:183 , HOH B:284 , HOH B:469
BINDING SITE FOR RESIDUE PEB B 203
6
AC6
SOFTWARE
LEU A:24 , GLU A:25 , GLN A:28 , SO4 A:166 , PEB A:202 , HOH A:389 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ILE B:142 , ASN B:144 , PHE B:153 , ALA B:154 , ALA B:155 , GLY B:156 , CYS B:158 , HOH B:187 , HOH B:198 , HOH B:235 , HOH B:365 , HOH B:384 , HOH B:391 , ARG C:33 , GLN C:147
BINDING SITE FOR RESIDUE PEB B 204
7
AC7
SOFTWARE
ASN B:47 , CYS B:50 , ASP B:54 , GLY B:58 , CYS B:61 , GLU B:62 , ARG B:129 , ALA B:136 , GLN B:137 , ALA B:146 , THR B:147 , GLU B:148 , ARG B:149 , HOH B:190 , HOH B:199 , HOH B:218 , HOH B:246 , HOH B:425 , HOH B:436
BINDING SITE FOR RESIDUE PEB B 205
8
AC8
SOFTWARE
MET B:1 , ASP B:107 , ARG B:108
BINDING SITE FOR RESIDUE SO4 B 178
9
BC3
SOFTWARE
ARG A:33 , GLN A:147 , GLU C:25 , GLN C:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , ILE D:142 , THR D:143 , ASN D:144 , PHE D:153 , ALA D:154 , ALA D:155 , GLY D:156 , CYS D:158 , SO4 D:179 , HOH D:212 , HOH D:233 , HOH D:374 , HOH D:379 , HOH D:410 , HOH D:491
BINDING SITE FOR RESIDUE PEB D 209
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3v57a_ (A:)
1b: SCOP_d3v57b_ (B:)
1c: SCOP_d3v57c_ (C:)
1d: SCOP_d3v57d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Red alga (Porphyridium purpureum) [TaxId: 35688]
(2)
1a
d3v57a_
A:
1b
d3v57b_
B:
1c
d3v57c_
C:
1d
d3v57d_
D:
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CATH Domains
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Show PDB file:
Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (184 KB)
Header - Biol.Unit 1
Biol.Unit 2 (185 KB)
Header - Biol.Unit 2
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