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3V4Y
Asym. Unit
Info
Asym.Unit (684 KB)
Biol.Unit 1 (173 KB)
Biol.Unit 2 (171 KB)
Biol.Unit 3 (172 KB)
Biol.Unit 4 (173 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST NUCLEAR PP1 HOLOENZYME
Authors
:
R. Page, W. Peti, N. E. O'Connell, S. Nichols
Date
:
15 Dec 11 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Pp1, Ser/Thr Phosphatase, Nipp1, Idp, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. O'Connell, S. R. Nichols, E. Heroes, M. Beullens, M. Bollen, W. Peti R. Page
The Molecular Basis For Substrate Specificity Of The Nuclea Nipp1:Pp1 Holoenzyme.
Structure V. 20 1746 2012
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close entry info
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: POLYETHYLENE GLYCOL (N=34) (15Pa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
15P
1
Ligand/Ion
POLYETHYLENE GLYCOL (N=34)
2
GOL
10
Ligand/Ion
GLYCEROL
3
MN
8
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , MN A:402 , HOH A:517
BINDING SITE FOR RESIDUE MN A 401
02
AC2
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:401 , HOH A:517 , HOH A:661
BINDING SITE FOR RESIDUE MN A 402
03
AC3
SOFTWARE
GLU A:56 , ASN A:86 , GLU A:116 , HOH C:545
BINDING SITE FOR RESIDUE GOL A 403
04
AC4
SOFTWARE
PRO A:50 , LEU A:53 , GLU A:54 , GLU A:116 , HOH A:587 , HOH A:630
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
CYS A:127 , SER A:129 , VAL A:195 , PRO A:196 , TRP A:206 , HOH A:544
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
SER A:129 , ARG A:132 , ILE A:133 , TRP A:149 , ASP C:300
BINDING SITE FOR RESIDUE 15P A 406
07
AC7
SOFTWARE
ASP C:64 , HIS C:66 , ASP C:92 , MN C:402 , HOH C:614 , HOH C:662
BINDING SITE FOR RESIDUE MN C 401
08
AC8
SOFTWARE
ASP C:92 , ASN C:124 , HIS C:173 , HIS C:248 , MN C:401 , HOH C:614
BINDING SITE FOR RESIDUE MN C 402
09
AC9
SOFTWARE
PRO C:50 , LEU C:53 , GLU C:54 , GLU C:116
BINDING SITE FOR RESIDUE GOL C 403
10
BC1
SOFTWARE
ARG A:188 , HIS B:173 , ARG B:176 , ILE B:177 , SER B:178 , HOH B:303 , HOH B:316 , SER C:129 , ARG C:132
BINDING SITE FOR RESIDUE GOL C 404
11
BC2
SOFTWARE
ASP C:208 , ASN C:219 , ASP C:220 , GLN C:249 , HOH C:601
BINDING SITE FOR RESIDUE GOL C 405
12
BC3
SOFTWARE
ASP E:64 , HIS E:66 , ASP E:92 , MN E:402 , HOH E:555 , HOH E:604
BINDING SITE FOR RESIDUE MN E 401
13
BC4
SOFTWARE
ASP E:92 , ASN E:124 , HIS E:173 , HIS E:248 , MN E:401 , HOH E:604
BINDING SITE FOR RESIDUE MN E 402
14
BC5
SOFTWARE
CYS E:127 , SER E:129 , VAL E:195 , PRO E:196 , ASP E:197 , TRP E:206 , HOH E:572
BINDING SITE FOR RESIDUE GOL E 403
15
BC6
SOFTWARE
LEU E:55 , GLU E:56 , ASN E:86 , GLU E:116
BINDING SITE FOR RESIDUE GOL E 404
16
BC7
SOFTWARE
GLU E:54
BINDING SITE FOR RESIDUE GOL E 405
17
BC8
SOFTWARE
ASP G:64 , HIS G:66 , ASP G:92 , MN G:402 , HOH G:587
BINDING SITE FOR RESIDUE MN G 401
18
BC9
SOFTWARE
ASP G:92 , ASN G:124 , HIS G:173 , HIS G:248 , MN G:401 , HOH G:534 , HOH G:587
BINDING SITE FOR RESIDUE MN G 402
19
CC1
SOFTWARE
PRO G:50 , GLU G:54 , GLU G:116 , PHE G:119
BINDING SITE FOR RESIDUE GOL G 403
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,C:121-126,E:121-126,G:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
4
A:121-126
C:121-126
E:121-126
G:121-126
[
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Exons
(7, 28)
Info
All Exons
Exon 1.3a (A:7-19 | C:-1-19 | E:7-19 | G:-5-1...)
Exon 1.4d (A:19-63 | C:19-63 | E:19-63 | G:19...)
Exon 1.4f (A:63-140 | C:63-140 | E:63-140 | G...)
Exon 1.5a (A:140-175 | C:140-175 | E:140-175 ...)
Exon 1.6a (A:175-249 | C:175-249 | E:175-249 ...)
Exon 1.6d (A:250-294 | C:250-294 | E:250-294 ...)
Exon 1.7c (A:295-299 | C:295-300 | E:295-299 ...)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4d
3: Boundary 1.4d/1.4f
4: Boundary 1.4f/1.5a
5: Boundary 1.5a/1.6a
6: Boundary 1.6a/1.6d
7: Boundary 1.6d/1.7c
8: Boundary 1.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
4
A:7-19
C:-1-19
E:7-19
G:-5-19
13
14
13
18
1.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
4
A:19-63
C:19-63
E:19-63
G:19-63
45
45
45
45
1.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
4
A:63-140
C:63-140
E:63-140
G:63-140
78
78
78
78
1.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
4
A:140-175
C:140-175
E:140-175
G:140-175
36
36
36
36
1.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
4
A:175-249
C:175-249
E:175-249
G:175-249
75
75
75
75
1.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
4
A:250-294
C:250-294
E:250-294
G:250-294
45
45
45
45
1.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
4
A:295-299
C:295-300
E:295-299
G:295-298
5
6
5
4
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3v4ya_ (A:)
1b: SCOP_d3v4yc_ (C:)
1c: SCOP_d3v4ye_ (E:)
1d: SCOP_d3v4yg_ (G:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3v4ya_
A:
1b
d3v4yc_
C:
1c
d3v4ye_
E:
1d
d3v4yg_
G:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain H
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