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3V4T
Asym. Unit
Info
Asym.Unit (539 KB)
Biol.Unit 1 (268 KB)
Biol.Unit 2 (271 KB)
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(1)
Title
:
E. CLOACAE C115D MURA LIGANDED WITH UNAG
Authors
:
J. -Y. Zhu, Y. Yang, E. Schonbrunn
Date
:
15 Dec 11 (Deposition) - 07 Mar 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Mura, Close Enzyme State, Cell Wall, Biogenesis/Degradation, Peptidoglycan Synthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Zhu, Y. Yang, H. Han, S. Betzi, S. H. Olesen, F. Marsilio, E. Schonbrunn
Functional Consequence Of Covalent Reaction Of Phosphoenolpyruvate With Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura).
J. Biol. Chem. V. 287 12657 2012
[
close entry info
]
Hetero Components
(4, 80)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
1q: ACETATE ION (ACTq)
1r: ACETATE ION (ACTr)
1s: ACETATE ION (ACTs)
1t: ACETATE ION (ACTt)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: BETA-L-ASPARTIC ACID (IASa)
3b: BETA-L-ASPARTIC ACID (IASb)
3c: BETA-L-ASPARTIC ACID (IASc)
3d: BETA-L-ASPARTIC ACID (IASd)
3e: BETA-L-ASPARTIC ACID (IASe)
3f: BETA-L-ASPARTIC ACID (IASf)
3g: BETA-L-ASPARTIC ACID (IASg)
3h: BETA-L-ASPARTIC ACID (IASh)
4a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
4b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
4c: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1c)
4d: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1d)
4e: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1e)
4f: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1f)
4g: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1g)
4h: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
20
Ligand/Ion
ACETATE ION
2
EDO
44
Ligand/Ion
1,2-ETHANEDIOL
3
IAS
8
Mod. Amino Acid
BETA-L-ASPARTIC ACID
4
UD1
8
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
close Hetero Component info
]
Sites
(71, 71)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:23 , TRP A:95 , ARG A:120 , PRO A:121 , VAL A:122 , ASP A:123 , LEU A:124 , HIS A:125 , LYS A:160 , SER A:162 , VAL A:163 , GLY A:164 , THR A:304 , ASP A:305 , ILE A:327 , PHE A:328 , EDO A:506 , EDO A:507 , HOH A:608 , HOH A:626 , HOH A:653
BINDING SITE FOR RESIDUE UD1 A 501
02
AC2
SOFTWARE
TYR A:84 , VAL A:87 , SER A:110 , LEU A:111 , PRO A:112 , GLY A:113
BINDING SITE FOR RESIDUE ACT A 502
03
AC3
SOFTWARE
ARG A:267 , ILE A:273 , GLU A:274 , THR A:275
BINDING SITE FOR RESIDUE ACT A 503
04
AC4
SOFTWARE
ALA A:363 , GLN A:364 , THR A:386 , VAL A:388 , GLU D:140
BINDING SITE FOR RESIDUE ACT A 504
05
AC5
SOFTWARE
ASN A:350 , GLU C:348
BINDING SITE FOR RESIDUE ACT A 505
06
AC6
SOFTWARE
ARG A:91 , HIS A:125 , GLY A:164 , UD1 A:501 , HOH A:653
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
VAL A:161 , GLU A:188 , PRO A:298 , UD1 A:501 , HOH A:604 , HOH A:663
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
ASP A:260 , LEU A:263 , ARG A:267 , HIS B:155
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
ASP A:193 , GLN A:255
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
ASN B:23 , TRP B:95 , ARG B:120 , PRO B:121 , VAL B:122 , ASP B:123 , LEU B:124 , HIS B:125 , LYS B:160 , SER B:162 , VAL B:163 , GLY B:164 , THR B:304 , ASP B:305 , ILE B:327 , PHE B:328 , ACT B:502 , EDO B:503 , EDO B:504 , HOH B:602 , HOH B:608 , HOH B:613
BINDING SITE FOR RESIDUE UD1 B 501
11
BC2
SOFTWARE
THR B:326 , ILE B:327 , GLU B:329 , UD1 B:501
BINDING SITE FOR RESIDUE ACT B 502
12
BC3
SOFTWARE
TRP B:95 , ARG B:120 , HIS B:125 , GLY B:164 , UD1 B:501 , HOH B:602
BINDING SITE FOR RESIDUE EDO B 503
13
BC4
SOFTWARE
LYS B:22 , LEU B:26 , ASP B:49 , MET B:90 , ARG B:91 , ALA B:92 , ARG B:397 , UD1 B:501
BINDING SITE FOR RESIDUE EDO B 504
14
BC5
SOFTWARE
VAL B:192 , ASP B:193 , ASN B:196 , TYR B:226 , GLN B:255 , HOH B:626
BINDING SITE FOR RESIDUE EDO B 505
15
BC6
SOFTWARE
ASN C:23 , TRP C:95 , ARG C:120 , PRO C:121 , VAL C:122 , ASP C:123 , LEU C:124 , HIS C:125 , SER C:162 , VAL C:163 , GLY C:164 , THR C:304 , ASP C:305 , ILE C:327 , PHE C:328 , EDO C:504 , HOH C:604 , HOH C:605 , HOH C:608 , HOH C:616 , HOH C:626 , HOH C:629 , HOH C:634
BINDING SITE FOR RESIDUE UD1 C 501
16
BC7
SOFTWARE
ASP C:257 , GLY C:276 , GLU C:277
BINDING SITE FOR RESIDUE ACT C 502
17
BC8
SOFTWARE
LYS C:160 , VAL C:161 , ILE C:327 , HOH C:615 , HOH C:634
BINDING SITE FOR RESIDUE ACT C 503
18
BC9
SOFTWARE
ALA C:92 , TRP C:95 , ARG C:120 , HIS C:125 , GLY C:164 , UD1 C:501 , HOH C:604
BINDING SITE FOR RESIDUE EDO C 504
19
CC1
SOFTWARE
THR C:52 , LEU C:86
BINDING SITE FOR RESIDUE EDO C 505
20
CC2
SOFTWARE
VAL C:192 , ASP C:193 , ASN C:196 , GLN C:255
BINDING SITE FOR RESIDUE EDO C 506
21
CC3
SOFTWARE
ARG C:252 , ASN C:253
BINDING SITE FOR RESIDUE EDO C 507
22
CC4
SOFTWARE
ASN D:23 , TRP D:95 , ARG D:120 , PRO D:121 , VAL D:122 , ASP D:123 , LEU D:124 , HIS D:125 , LYS D:160 , SER D:162 , VAL D:163 , GLY D:164 , THR D:304 , ASP D:305 , ILE D:327 , PHE D:328 , EDO D:504 , EDO D:506 , EDO D:510 , HOH D:602 , HOH D:625 , HOH D:659
BINDING SITE FOR RESIDUE UD1 D 501
23
CC5
SOFTWARE
ASN D:412
BINDING SITE FOR RESIDUE ACT D 502
24
CC6
SOFTWARE
GLN D:108 , TYR D:142 , LYS D:144
BINDING SITE FOR RESIDUE ACT D 503
25
CC7
SOFTWARE
ARG D:91 , ALA D:92 , TRP D:95 , HIS D:125 , GLY D:164 , UD1 D:501 , EDO D:510 , HOH D:602
BINDING SITE FOR RESIDUE EDO D 504
26
CC8
SOFTWARE
LYS D:22 , LEU D:26 , ASP D:49 , ARG D:91 , ALA D:92 , LEU D:370 , ARG D:397 , EDO D:510
BINDING SITE FOR RESIDUE EDO D 505
27
CC9
SOFTWARE
VAL D:161 , GLU D:188 , PRO D:298 , ILE D:327 , UD1 D:501 , HOH D:624
BINDING SITE FOR RESIDUE EDO D 506
28
DC1
SOFTWARE
ILE D:244 , GLU D:358 , ILE D:382 , ACT H:505
BINDING SITE FOR RESIDUE EDO D 507
29
DC2
SOFTWARE
ARG D:150 , LEU D:175 , GLU D:177
BINDING SITE FOR RESIDUE EDO D 508
30
DC3
SOFTWARE
ARG A:340 , TYR D:84 , VAL D:87 , LYS D:88 , SER D:110 , LEU D:111 , PRO D:112 , GLY D:113 , HOH D:637
BINDING SITE FOR RESIDUE EDO D 509
31
DC4
SOFTWARE
ARG D:120 , LEU D:370 , UD1 D:501 , EDO D:504 , EDO D:505
BINDING SITE FOR RESIDUE EDO D 510
32
DC5
SOFTWARE
ASN E:23 , TRP E:95 , ARG E:120 , PRO E:121 , VAL E:122 , ASP E:123 , LEU E:124 , HIS E:125 , LYS E:160 , SER E:162 , VAL E:163 , GLY E:164 , THR E:304 , ASP E:305 , ILE E:327 , PHE E:328 , ACT E:502 , EDO E:509 , HOH E:603 , HOH E:608 , HOH E:618 , HOH E:644
BINDING SITE FOR RESIDUE UD1 E 501
33
DC6
SOFTWARE
LYS E:22 , ARG E:120 , LEU E:370 , UD1 E:501
BINDING SITE FOR RESIDUE ACT E 502
34
DC7
SOFTWARE
GLN E:7 , PRO E:9
BINDING SITE FOR RESIDUE ACT E 503
35
DC8
SOFTWARE
GLU E:65
BINDING SITE FOR RESIDUE ACT E 504
36
DC9
SOFTWARE
ASN A:412 , ARG E:11 , GLN E:13
BINDING SITE FOR RESIDUE EDO E 505
37
EC1
SOFTWARE
VAL E:316 , GLU E:358 , LYS E:359 , LEU E:360 , ILE E:382
BINDING SITE FOR RESIDUE EDO E 506
38
EC2
SOFTWARE
ARG A:11 , SER A:245 , HIS E:285 , GLY E:286 , LYS E:287
BINDING SITE FOR RESIDUE EDO E 507
39
EC3
SOFTWARE
ASP E:123
BINDING SITE FOR RESIDUE EDO E 508
40
EC4
SOFTWARE
ARG E:91 , TRP E:95 , ARG E:120 , HIS E:125 , GLY E:164 , UD1 E:501 , HOH E:608
BINDING SITE FOR RESIDUE EDO E 509
41
EC5
SOFTWARE
ASP E:404
BINDING SITE FOR RESIDUE EDO E 510
42
EC6
SOFTWARE
PRO E:38 , GLY E:224 , GLU H:277 , ASP H:278
BINDING SITE FOR RESIDUE EDO E 511
43
EC7
SOFTWARE
ASN F:23 , TRP F:95 , ARG F:120 , PRO F:121 , VAL F:122 , ASP F:123 , LEU F:124 , HIS F:125 , LYS F:160 , SER F:162 , VAL F:163 , GLY F:164 , THR F:304 , ASP F:305 , ILE F:327 , PHE F:328 , EDO F:505 , HOH F:606 , HOH F:612 , HOH F:622 , HOH F:625 , HOH F:634 , HOH F:635
BINDING SITE FOR RESIDUE UD1 F 501
44
EC8
SOFTWARE
PHE F:328 , GLU F:329 , ARG F:331 , PHE F:332 , SER F:349 , ASN F:350
BINDING SITE FOR RESIDUE ACT F 503
45
EC9
SOFTWARE
ARG F:288 , GLU F:318
BINDING SITE FOR RESIDUE ACT F 504
46
FC1
SOFTWARE
ARG F:91 , ILE F:94 , TRP F:95 , ARG F:120 , HIS F:125 , GLY F:164 , UD1 F:501 , HOH F:606
BINDING SITE FOR RESIDUE EDO F 505
47
FC2
SOFTWARE
HIS E:155 , ALA F:264 , ARG F:267
BINDING SITE FOR RESIDUE EDO F 506
48
FC3
SOFTWARE
HOH F:644
BINDING SITE FOR RESIDUE EDO F 507
49
FC4
SOFTWARE
ARG E:295 , LYS F:160 , VAL F:161 , ILE F:327 , HOH F:656
BINDING SITE FOR RESIDUE EDO F 508
50
FC5
SOFTWARE
ALA E:261 , ALA E:264 , LYS E:265 , GLU E:268 , HOH E:636 , VAL F:157 , ASP F:159
BINDING SITE FOR RESIDUE EDO F 509
51
FC6
SOFTWARE
ASN G:23 , TRP G:95 , ARG G:120 , PRO G:121 , VAL G:122 , ASP G:123 , LEU G:124 , LYS G:160 , SER G:162 , VAL G:163 , GLY G:164 , THR G:304 , ASP G:305 , ILE G:327 , PHE G:328 , ARG G:331 , EDO G:502 , HOH G:604 , HOH G:614 , HOH G:643 , HOH G:646 , HOH G:660
BINDING SITE FOR RESIDUE UD1 G 501
52
FC7
SOFTWARE
ARG G:91 , TRP G:95 , HIS G:125 , GLY G:164 , UD1 G:501 , HOH G:643
BINDING SITE FOR RESIDUE EDO G 502
53
FC8
SOFTWARE
THR G:210 , ASP G:211 , GLY H:209
BINDING SITE FOR RESIDUE EDO G 503
54
FC9
SOFTWARE
LEU G:111 , PRO G:121 , VAL G:122
BINDING SITE FOR RESIDUE EDO G 504
55
GC1
SOFTWARE
ASN G:196
BINDING SITE FOR RESIDUE EDO G 505
56
GC2
SOFTWARE
ARG G:252 , SER G:281
BINDING SITE FOR RESIDUE EDO G 506
57
GC3
SOFTWARE
ASP G:260 , ALA G:264 , ARG G:267
BINDING SITE FOR RESIDUE EDO G 507
58
GC4
SOFTWARE
GLN G:7 , GLY G:8 , PRO G:9 , THR G:10 , ASN G:412
BINDING SITE FOR RESIDUE EDO G 508
59
GC5
SOFTWARE
ASN H:23 , TRP H:95 , ARG H:120 , PRO H:121 , VAL H:122 , ASP H:123 , LEU H:124 , LYS H:160 , SER H:162 , VAL H:163 , GLY H:164 , THR H:304 , ASP H:305 , ILE H:327 , ACT H:503 , HOH H:606 , HOH H:607
BINDING SITE FOR RESIDUE UD1 H 501
60
GC6
SOFTWARE
GLY H:207 , GLN H:208 , HOH H:639
BINDING SITE FOR RESIDUE ACT H 502
61
GC7
SOFTWARE
ARG H:91 , TRP H:95 , HIS H:125 , GLY H:164 , UD1 H:501 , HOH H:606
BINDING SITE FOR RESIDUE ACT H 503
62
GC8
SOFTWARE
LYS H:63 , GLU H:65 , TRP H:71
BINDING SITE FOR RESIDUE ACT H 504
63
GC9
SOFTWARE
THR D:10 , ARG D:11 , EDO D:507 , HIS H:285 , GLY H:286 , LYS H:287
BINDING SITE FOR RESIDUE ACT H 505
64
HC1
SOFTWARE
PRO H:38 , VAL H:225
BINDING SITE FOR RESIDUE ACT H 506
65
HC2
SOFTWARE
TYR H:84 , VAL H:87 , LYS H:88 , SER H:110 , LEU H:111 , PRO H:112 , GLY H:113 , HOH H:655
BINDING SITE FOR RESIDUE EDO H 507
66
HC3
SOFTWARE
PRO H:27 , ALA H:31 , TRP H:95 , PRO H:99 , VAL H:167 , THR H:168 , SER H:171 , HOH H:628
BINDING SITE FOR RESIDUE EDO H 508
67
HC4
SOFTWARE
ILE H:126 , HOH H:644
BINDING SITE FOR RESIDUE EDO H 509
68
HC5
SOFTWARE
THR H:58 , HOH H:610
BINDING SITE FOR RESIDUE EDO H 510
69
HC6
SOFTWARE
LYS H:88 , THR H:89 , ARG H:91 , ASP H:115 , ARG H:397 , HOH H:641 , HOH H:655
BINDING SITE FOR RESIDUE EDO H 511
70
HC7
SOFTWARE
SER H:19 , GLY H:20 , LYS H:22 , PRO H:45 , ASP H:231 , GLU H:234 , GLY H:398 , TYR H:399 , GLU H:400 , HOH H:633
BINDING SITE FOR RESIDUE EDO H 512
71
HC8
SOFTWARE
PRO H:9 , ASN H:412
BINDING SITE FOR RESIDUE EDO H 513
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3v4ta_ (A:)
1b: SCOP_d3v4tb_ (B:)
1c: SCOP_d3v4tc_ (C:)
1d: SCOP_d3v4td_ (D:)
1e: SCOP_d3v4te_ (E:)
1f: SCOP_d3v4tf_ (F:)
1g: SCOP_d3v4tg_ (G:)
1h: SCOP_d3v4th_ (H:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
(27)
Enterobacter cloacae [TaxId: 550]
(12)
1a
d3v4ta_
A:
1b
d3v4tb_
B:
1c
d3v4tc_
C:
1d
d3v4td_
D:
1e
d3v4te_
E:
1f
d3v4tf_
F:
1g
d3v4tg_
G:
1h
d3v4th_
H:
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CATH Domains
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Info
all CATH domains
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Label:
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Pfam Domains
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
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Stereo
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (539 KB)
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Header - Biol.Unit 2
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