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3V2U
Asym. Unit
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Asym.Unit (647 KB)
Biol.Unit 1 (639 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE YEAST GAL REGULON COMPLEX OF THE REPRESSOR, GAL80P, AND THE TRANSDUCER, GAL3P, WITH GALACTOSE AND ATP
Authors
:
T. Lavy, P. R. Kumar, H. He, L. Joshua-Tor
Date
:
12 Dec 11 (Deposition) - 08 Feb 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rossmann Fold, Ghmp Superfamily, Transcription Regulation, Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Lavy, P. R. Kumar, H. He, L. Joshua-Tor
The Gal3P Transducer Of The Gal Regulon Interacts With The Gal80P Repressor In Its Ligand-Induced Closed Conformation.
Genes Dev. V. 26 294 2012
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
GLA
2
Ligand/Ion
ALPHA D-GALACTOSE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:304 , GLU A:306 , TYR A:320 , HOH A:965 , HOH A:1100 , PHE B:288 , ARG D:362
BINDING SITE FOR RESIDUE GOL A 524
2
AC2
SOFTWARE
PHE A:288 , LYS B:304 , GLU B:306 , TYR B:320 , HOH B:966 , ARG C:362
BINDING SITE FOR RESIDUE GOL B 524
3
AC3
SOFTWARE
SER C:163 , ATP C:523 , HOH C:594 , HOH C:595
BINDING SITE FOR RESIDUE MG C 521
4
AC4
SOFTWARE
GLU C:53 , HIS C:54 , ASP C:56 , TYR C:57 , ASN C:205 , GLY C:206 , MET C:208 , ASP C:209 , LYS C:258 , TYR C:266 , ALA C:460 , ATP C:523 , HOH C:555 , HOH C:595 , HOH C:652
BINDING SITE FOR RESIDUE GLA C 522
5
AC5
SOFTWARE
ARG C:47 , MET C:71 , ASN C:89 , PHE C:94 , TRP C:117 , TYR C:120 , THR C:158 , GLY C:159 , GLY C:160 , GLY C:161 , LEU C:162 , SER C:163 , LYS C:258 , ALA C:460 , MG C:521 , GLA C:522 , HOH C:547 , HOH C:556 , HOH C:594 , HOH C:595 , HOH C:601 , HOH C:648 , HOH C:726 , HOH C:873 , HOH C:878 , HOH C:927
BINDING SITE FOR RESIDUE ATP C 523
6
AC6
SOFTWARE
SER D:163 , LYS D:258 , ATP D:523 , HOH D:533 , HOH D:596
BINDING SITE FOR RESIDUE MG D 521
7
AC7
SOFTWARE
GLU D:53 , HIS D:54 , ASP D:56 , TYR D:57 , ASN D:205 , GLY D:206 , MET D:208 , ASP D:209 , LYS D:258 , TYR D:266 , ALA D:460 , ATP D:523 , HOH D:527 , HOH D:564 , HOH D:596
BINDING SITE FOR RESIDUE GLA D 522
8
AC8
SOFTWARE
ARG D:47 , MET D:71 , ASN D:89 , PHE D:94 , TRP D:117 , TYR D:120 , THR D:158 , GLY D:159 , GLY D:160 , GLY D:161 , LEU D:162 , SER D:163 , PHE D:166 , LYS D:258 , ALA D:460 , MG D:521 , GLA D:522 , HOH D:544 , HOH D:671 , HOH D:862 , HOH D:874 , HOH D:876 , HOH D:879
BINDING SITE FOR RESIDUE ATP D 523
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALACTOKINASE (C:46-57,D:46-57)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALACTOKINASE
PS00106
Galactokinase signature.
GAL3_YEAST
46-57
2
C:46-57
D:46-57
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:15-435 (gaps) | B:15-435 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YML051W
1
YML051W.1
XIII:171594-172901
1308
GAL80_YEAST
1-435
435
2
A:15-435 (gaps)
B:15-435 (gaps)
421
421
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (647 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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