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3V0L
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (199 KB)
Biol.Unit 2 (199 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FUCOSYLGALACTOSIDE ALPHA N-ACETYLGALACTOSAMINYLTRANSFERASE (GTA, CISAB MUTANT L266G, G268A) IN COMPLEX WITH A NOVEL UDP-GAL DERIVED INHIBITOR (2GW)
Authors
:
M. M. Palcic, R. Jorgensen
Date
:
08 Dec 11 (Deposition) - 23 Jan 13 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (2x)
Keywords
:
Gta, Abo, Cisab Mutant, Rossmann Fold, "Semi-Closed" Conformation, Glycosyltransferase, Glycoprotein, Blood Group Antigen, Udp-Galnac, Metal-Binding, Manganese, Glycosylation, Transmembrane, Golgi Apparatus, Secreted, Signal-Anchor, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Jrgensen, T. Pesnot, H. J. Lee, M. M. Palcic, G. K. Wagner
Base-Modified Donor Analogues Reveal Novel Dynamic Features Of A Glycosyltransferase.
J. Biol. Chem. V. 288 26201 2013
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 5-PHENYL-URIDINE-5'-ALPHA-D-GALACT... (2GWa)
2a: MANGANESE (II) ION (MNa)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2GW
1
Ligand/Ion
5-PHENYL-URIDINE-5'-ALPHA-D-GALACTOSYL-DIPHOSPHATE
2
MN
1
Ligand/Ion
MANGANESE (II) ION
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:211 , ASP A:213 , 2GW A:450 , HOH A:1144
BINDING SITE FOR RESIDUE MN A 1
2
AC2
SOFTWARE
MN A:1 , PHE A:121 , ALA A:122 , ILE A:123 , TYR A:126 , TRP A:181 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , GLY A:267 , ALA A:268 , TRP A:300 , HIS A:301 , ASP A:302 , GLU A:303 , HOH A:1016 , HOH A:1064 , HOH A:1210
BINDING SITE FOR RESIDUE 2GW A 450
3
AC3
SOFTWARE
ARG A:110 , ARG A:146 , THR A:166 , GLY A:167 , HOH A:1074 , HOH A:1196 , HOH A:1223
BINDING SITE FOR RESIDUE SO4 A 2
[
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SAPs(SNPs)/Variants
(20, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_019150 (P74S, chain A, )
02: VAR_003409 (P156L, chain A, )
03: VAR_019151 (R161H, chain A, )
04: VAR_036738 (T163M, chain A, )
05: VAR_003410 (R176G, chain A, )
06: VAR_036739 (R198W, chain A, )
07: VAR_019152 (R199C, chain A, )
08: VAR_036740 (M214R, chain A, )
09: VAR_019153 (F216I, chain A, )
10: VAR_036741 (E223D, chain A, )
11: VAR_055227 (G230R, chain A, )
12: VAR_072628 (P234A, chain A, )
13: VAR_003411 (G235S, chain A, )
14: VAR_033540 (P257L, chain A, )
15: VAR_003412 (G266M, chain A, )
16: VAR_003413 (A268A, chain A, )
17: VAR_033541 (A268R, chain A, )
18: VAR_019154 (V277M, chain A, )
19: VAR_036742 (M288R, chain A, )
20: VAR_036743 (D291N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019150
P
74
S
BGAT_HUMAN
Polymorphism
512770
A
P
74
S
02
UniProt
VAR_003409
P
156
L
BGAT_HUMAN
Polymorphism
1053878
A
P
156
L
03
UniProt
VAR_019151
R
161
H
BGAT_HUMAN
Polymorphism
8176738
A
R
161
H
04
UniProt
VAR_036738
T
163
M
BGAT_HUMAN
Polymorphism
55756402
A
T
163
M
05
UniProt
VAR_003410
R
176
G
BGAT_HUMAN
Polymorphism
7853989
A
R
176
G
06
UniProt
VAR_036739
R
198
W
BGAT_HUMAN
Polymorphism
56223957
A
R
198
W
07
UniProt
VAR_019152
R
199
C
BGAT_HUMAN
Polymorphism
8176739
A
R
199
C
08
UniProt
VAR_036740
M
214
R
BGAT_HUMAN
Polymorphism
55827808
A
M
214
R
09
UniProt
VAR_019153
F
216
I
BGAT_HUMAN
Polymorphism
8176740
A
F
216
I
10
UniProt
VAR_036741
E
223
D
BGAT_HUMAN
Polymorphism
---
A
E
223
D
11
UniProt
VAR_055227
G
230
R
BGAT_HUMAN
Unclassified
---
A
G
230
R
12
UniProt
VAR_072628
P
234
A
BGAT_HUMAN
Polymorphism
---
A
P
234
A
13
UniProt
VAR_003411
G
235
S
BGAT_HUMAN
Polymorphism
8176743
A
G
235
S
14
UniProt
VAR_033540
P
257
L
BGAT_HUMAN
Polymorphism
8176745
A
P
257
L
15
UniProt
VAR_003412
L
266
M
BGAT_HUMAN
Polymorphism
8176746
A
G
266
M
16
UniProt
VAR_003413
G
268
A
BGAT_HUMAN
Polymorphism
8176747
A
A
268
A
17
UniProt
VAR_033541
G
268
R
BGAT_HUMAN
Polymorphism
8176747
A
A
268
R
18
UniProt
VAR_019154
V
277
M
BGAT_HUMAN
Polymorphism
8176748
A
V
277
M
19
UniProt
VAR_036742
M
288
R
BGAT_HUMAN
Polymorphism
---
A
M
288
R
20
UniProt
VAR_036743
D
291
N
BGAT_HUMAN
Polymorphism
---
A
D
291
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3v0la_ (A:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3v0la_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (109 KB)
Header - Asym.Unit
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