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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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3V0A
Asym. Unit
Info
Asym.Unit (895 KB)
Biol.Unit 1 (884 KB)
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(1)
Title
:
2.7 ANGSTROM CRYSTAL STRUCTURE OF BONT/AI IN COMPLEX WITH NTNHA
Authors
:
S. Gu, S. Rumpel, J. Zhou, J. Strotmeier, H. Bigalke, K. Perry, C. B. Shoe A. Rummel, R. Jin
Date
:
07 Dec 11 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Botulinum Neurotoxin, Toxin, Neurotoxin Associated Protein, Progenitor Toxin Complex, Vhh Bound Interlocked Complex, Ntnha
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Gu, S. Rumpel, J. Zhou, J. Strotmeier, H. Bigalke, K. Perry, C. B. Shoemaker, A. Rummel, R. Jin
Botulinum Neurotoxin Is Shielded By Ntnha In An Interlocked Complex.
Science V. 335 977 2012
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
2d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
SO4
20
Ligand/Ion
SULFATE ION
4
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:223 , HIS A:227 , GLU A:262 , HOH A:1361
BINDING SITE FOR RESIDUE ZN A 1297
02
AC2
SOFTWARE
ALA A:575 , ASN A:578 , ARG A:581 , HOH A:1333 , HOH A:1490 , HOH A:1491
BINDING SITE FOR RESIDUE CA A 1298
03
AC3
SOFTWARE
GLU A:775 , LYS A:779 , ASN A:940 , LYS A:1077 , GLU A:1078
BINDING SITE FOR RESIDUE SO4 A 1299
04
AC4
SOFTWARE
ASN A:763 , THR A:990 , ASN A:1046
BINDING SITE FOR RESIDUE SO4 A 1300
05
AC5
SOFTWARE
SER A:1002 , ILE A:1005
BINDING SITE FOR RESIDUE SO4 A 1301
06
AC6
SOFTWARE
VAL A:1143 , MET A:1144 , TYR A:1149 , GLU A:1293 , ARG A:1294
BINDING SITE FOR RESIDUE SO4 A 1302
07
AC7
SOFTWARE
VAL A:621 , THR A:623 , GLN B:577 , GLU B:578
BINDING SITE FOR RESIDUE SO4 A 1303
08
AC8
SOFTWARE
ASN A:959 , ASN A:960 , GLU A:961 , ARG A:1061
BINDING SITE FOR RESIDUE SO4 A 1304
09
AC9
SOFTWARE
LYS A:929 , ASN A:930 , HOH A:1422 , HOH A:1476
BINDING SITE FOR RESIDUE SO4 A 1305
10
BC1
SOFTWARE
SER A:79 , THR A:80 , ASP A:81
BINDING SITE FOR RESIDUE SO4 A 1306
11
BC2
SOFTWARE
GLY A:169 , HIS A:170 , LEU A:173 , GLU A:529
BINDING SITE FOR RESIDUE SO4 A 1307
12
BC3
SOFTWARE
SER A:295 , ASN A:298 , HOH A:1434
BINDING SITE FOR RESIDUE SO4 A 1308
13
BC4
SOFTWARE
LEU A:416 , ASN A:418 , HOH A:1342
BINDING SITE FOR RESIDUE SO4 A 1309
14
BC5
SOFTWARE
LYS A:417 , GLY A:421 , LEU A:422 , ASN B:15
BINDING SITE FOR RESIDUE SO4 A 1310
15
BC6
SOFTWARE
LYS B:356 , GLY B:420 , ASP B:421 , GLY B:422 , LYS B:486 , HOH B:1212
BINDING SITE FOR RESIDUE SO4 B 1195
16
BC7
SOFTWARE
ASN B:352 , ASN B:353 , LEU B:355 , LYS B:361 , HOH B:1282
BINDING SITE FOR RESIDUE SO4 B 1196
17
BC8
SOFTWARE
ASN B:335 , ASN B:337
BINDING SITE FOR RESIDUE SO4 B 1197
18
BC9
SOFTWARE
LYS B:919 , LYS B:924
BINDING SITE FOR RESIDUE SO4 B 1198
19
CC1
SOFTWARE
ARG A:1179 , GLN A:1240 , ARG B:1049
BINDING SITE FOR RESIDUE SO4 B 1199
20
CC2
SOFTWARE
SER B:50 , LEU B:51 , SER B:52
BINDING SITE FOR RESIDUE SO4 B 1200
21
CC3
SOFTWARE
ARG B:249 , SER B:425
BINDING SITE FOR RESIDUE SO4 B 1201
22
CC4
SOFTWARE
THR B:284 , LYS B:292
BINDING SITE FOR RESIDUE MES B 1202
23
CC5
SOFTWARE
MET B:414 , ALA B:506 , ASN B:508 , THR B:509 , ASN B:510 , ASN B:511 , VAL B:523
BINDING SITE FOR RESIDUE MES B 1203
24
CC6
SOFTWARE
TYR B:1164 , ASN B:1181
BINDING SITE FOR RESIDUE MES B 1204
25
CC7
SOFTWARE
ASP B:65 , SER B:66 , ASP B:394
BINDING SITE FOR RESIDUE MES B 1205
26
CC8
SOFTWARE
ARG C:100
BINDING SITE FOR RESIDUE SO4 C 144
[
close Site info
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_BXA1_CLOBO_001 (A27A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_BXA1_CLOBO_001
*
V
27
A
BXA1_CLOBO
---
---
A
A
27
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:220-229)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
BXA1_CLOBO
220-229
1
A:220-229
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3v0ac_ (C:)
View:
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Label:
Classes
(
)
(
)
Folds
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(
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Superfamilies
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Llama (Lama glama) [TaxId: 9844]
(5)
1a
d3v0ac_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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