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3V09
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RABBIT SERUM ALBUMIN
Authors
:
K. A. Majorek, P. J. Porebski, M. Chruszcz, S. C. Almo, W. Minor, New Yor Structural Genomics Research Consortium (Nysgrc)
Date
:
07 Dec 11 (Deposition) - 18 Jan 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Allergen, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Carrier Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Majorek, P. J. Porebski, A. Dayal, M. D. Zimmerman, K. Jablonska, A. J. Stewart, M. Chruszcz, W. Minor
Structural And Immunologic Characterization Of Bovine, Horse, And Rabbit Serum Albumins.
Mol. Immunol. V. 52 174 2012
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: (UNKa)
5b: (UNKb)
5c: (UNKc)
5d: (UNKd)
5e: (UNKe)
5f: (UNKf)
5g: (UNKg)
5h: (UNKh)
5i: (UNKi)
5j: (UNKj)
5k: (UNKk)
5l: (UNKl)
5m: (UNKm)
5n: (UNKn)
5o: (UNKo)
5p: (UNKp)
5q: (UNKq)
5r: (UNKr)
5s: (UNKs)
5t: (UNKt)
5u: (UNKu)
5v: (UNKv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
5
UNK
22
Mod. Residue
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:387 , ASN A:391 , PHE A:403 , ARG A:410 , TYR A:411 , LEU A:430 , LEU A:453 , SER A:489
BINDING SITE FOR RESIDUE MES A 585
02
AC2
SOFTWARE
ASN A:402 , ASN A:405 , ASN A:541 , LYS A:545 , HOH A:793
BINDING SITE FOR RESIDUE PG4 A 586
03
AC3
SOFTWARE
ILE A:20 , LEU A:24 , TYR A:36 , VAL A:43 , LYS A:132
BINDING SITE FOR RESIDUE PG4 A 587
04
AC4
SOFTWARE
PHE A:115 , ARG A:117 , VAL A:142 , HIS A:146 , TYR A:161 , GLU A:186 , LEU A:190 , HOH A:686
BINDING SITE FOR RESIDUE MES A 588
05
AC5
SOFTWARE
GLN A:204 , LYS A:389
BINDING SITE FOR RESIDUE EDO A 611
06
AC6
SOFTWARE
HOH A:794
BINDING SITE FOR RESIDUE EDO A 612
07
AC7
SOFTWARE
SER A:489 , LEU A:491
BINDING SITE FOR RESIDUE EDO A 613
08
AC8
SOFTWARE
ASP A:249
BINDING SITE FOR RESIDUE EDO A 615
09
AC9
SOFTWARE
TYR A:150 , ARG A:257
BINDING SITE FOR RESIDUE CL A 616
10
BC1
SOFTWARE
ALA A:362 , ASP A:400
BINDING SITE FOR RESIDUE PG4 A 617
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: ALBUMIN_2 (-|A:187-379|A:380-577)
2: ALBUMIN_1 (A:161-185|A:353-377|A:551-575)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALBUMIN_2
PS51438
Albumin domain profile.
ALBU_RABIT
19-210
211-403
404-601
2
-
A:187-379
A:380-577
2
ALBUMIN_1
PS00212
Albumin domain signature.
ALBU_RABIT
185-209
377-401
575-599
3
A:161-185
A:353-377
A:551-575
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3v09a1 (A:1-196)
1b: SCOP_d3v09a2 (A:197-388)
1c: SCOP_d3v09a3 (A:389-583)
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Protein Domains
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Serum albumin-like
(99)
Superfamily
:
Serum albumin-like
(99)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(2)
1a
d3v09a1
A:1-196
1b
d3v09a2
A:197-388
1c
d3v09a3
A:389-583
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (202 KB)
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