PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3UZX
Biol. Unit 1
Info
Asym.Unit (129 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (65 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF 5BETA-REDUCTASE (AKR1D1) E120H MUTANT IN COMPLEX WITH NADP+ AND EPIANDROSTERONE
Authors
:
M. Chen, D. W. Christianson, T. M. Penning
Date
:
07 Dec 11 (Deposition) - 21 Mar 12 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aldo-Keto Reductase, Steroid And Bile Acid Metabolism, Catalytic Tetrad Mutant, Tim Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Chen, J. E. Drury, D. W. Christianson, T. M. Penning
Conversion Of Human Steroid 5Beta-Reductase (Akr1D1) Into 3β -Hydroxysteroid Dehydrogenase By Single Point Mutation E120H: Example Of Perfect Enzyme Engineering.
J. Biol. Chem. V. 287 16609 2012
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: 5-ALPHA-ANDROSTANE-3-BETA,17BETA-D... (AOMa)
2a: (3BETA,5ALPHA)-3-HYDROXYANDROSTAN-... (AOXa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AOM
1
Ligand/Ion
5-ALPHA-ANDROSTANE-3-BETA,17BETA-DIOL
2
AOX
-1
Ligand/Ion
(3BETA,5ALPHA)-3-HYDROXYANDROSTAN-17-ONE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:24 , THR A:25 , TYR A:26 , ASP A:53 , TYR A:58 , HIS A:120 , SER A:169 , ASN A:170 , GLN A:193 , TYR A:219 , SER A:220 , PRO A:221 , LEU A:222 , GLY A:223 , THR A:224 , SER A:225 , LEU A:239 , ALA A:256 , ILE A:271 , PRO A:272 , LYS A:273 , SER A:274 , PHE A:275 , ARG A:279 , GLU A:282 , ASN A:283 , AOM A:501 , HOH A:1027 , HOH A:1028 , HOH A:1061 , HOH A:1070 , HOH A:1086 , HOH A:1111 , HOH A:1200 , HOH A:1202 , HOH A:1212
BINDING SITE FOR RESIDUE NAP A 401
2
AC2
SOFTWARE
TYR A:26 , TYR A:58 , HIS A:120 , TYR A:132 , TRP A:230 , NAP A:401
BINDING SITE FOR RESIDUE AOM A 501
3
AC3
SOFTWARE
LYS A:87 , TRP A:89 , THR A:101 , ARG A:104 , HOH A:1072
BINDING SITE FOR RESIDUE CL A 601
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033007 (L106F, chain A, )
2: VAR_044430 (P133R, chain A, )
3: VAR_033008 (P198L, chain A, )
4: VAR_044431 (R261C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033007
L
106
F
AK1D1_HUMAN
Disease (CBAS2)
---
A
L
106
F
2
UniProt
VAR_044430
P
133
R
AK1D1_HUMAN
Disease (CBAS2)
---
A
P
133
R
3
UniProt
VAR_033008
P
198
L
AK1D1_HUMAN
Disease (CBAS2)
---
A
P
198
L
4
UniProt
VAR_044431
R
261
C
AK1D1_HUMAN
Disease (CBAS2)
---
A
R
261
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:48-65)
2: ALDOKETO_REDUCTASE_2 (A:154-171)
3: ALDOKETO_REDUCTASE_3 (A:271-286)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1D1_HUMAN
48-65
1
A:48-65
-
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1D1_HUMAN
154-171
1
A:154-171
-
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1D1_HUMAN
271-286
1
A:271-286
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3uzxa_ (A:)
1b: SCOP_d3uzxb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d3uzxa_
A:
1b
d3uzxb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3UZX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help