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3UYO
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MONOBODY SH13/ABL1 SH2 DOMAIN COMPLEX
Authors
:
J. B. Wojcik, A. Koide, S. Koide
Date
:
06 Dec 11 (Deposition) - 28 Dec 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (1x)
Keywords
:
Engineered Binding Protein, Antibody Mimic, Protein-Protein Complex, Sh2 Domain, Atp-Binding, Phosphoprotein, Tyrosine-Protein Kinase, Signaling Protein-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Koide, J. Wojcik, R. N. Gilbreth, R. J. Hoey, S. Koide
Teaching An Old Scaffold New Tricks: Monobodies Constructed Using Alternative Surfaces Of The Fn3 Scaffold.
J. Mol. Biol. V. 415 393 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:61 , VAL A:138 , ARG A:153 , ARG A:171 , HIS A:192 , HOH A:252
BINDING SITE FOR RESIDUE SO4 A 1
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051692 (L159P, chain A, )
2: VAR_032677 (R185K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051692
L
140
P
ABL1_HUMAN
Polymorphism
1064152
A
L
159
P
2
UniProt
VAR_032677
R
166
K
ABL1_HUMAN
Unclassified
---
A
R
185
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:146-236)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
ABL1_HUMAN
127-217
1
A:146-236
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Exons
(2, 2)
Info
All Exons
Exon 1.4b (A:134-202)
Exon 1.5 (A:203-247)
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All Exon Boundaries
1: Boundary 1.3b/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000318560
2a
ENSE00001955789
chr9:
133710453-133710912
460
ABL1_HUMAN
1-27
27
0
-
-
1.3b
ENST00000318560
3b
ENSE00000984287
chr9:
133729451-133729624
174
ABL1_HUMAN
27-85
59
0
-
-
1.4b
ENST00000318560
4b
ENSE00000868149
chr9:
133730188-133730483
296
ABL1_HUMAN
85-183
99
1
A:134-202
69
1.5
ENST00000318560
5
ENSE00002065214
chr9:
133738150-133738422
273
ABL1_HUMAN
184-274
91
1
A:203-247
45
1.6
ENST00000318560
6
ENSE00001726283
chr9:
133747516-133747600
85
ABL1_HUMAN
275-303
29
0
-
-
1.7
ENST00000318560
7
ENSE00001700841
chr9:
133748247-133748424
178
ABL1_HUMAN
303-362
60
0
-
-
1.8
ENST00000318560
8
ENSE00001758713
chr9:
133750255-133750439
185
ABL1_HUMAN
362-424
63
0
-
-
1.9
ENST00000318560
9
ENSE00001741732
chr9:
133753802-133753954
153
ABL1_HUMAN
424-475
52
0
-
-
1.10
ENST00000318560
10
ENSE00001715343
chr9:
133755455-133755544
90
ABL1_HUMAN
475-505
31
0
-
-
1.11
ENST00000318560
11
ENSE00001781962
chr9:
133755887-133756051
165
ABL1_HUMAN
505-560
56
0
-
-
1.12b
ENST00000318560
12b
ENSE00001457584
chr9:
133759356-133763062
3707
ABL1_HUMAN
560-1130
571
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3uyod_ (D:)
2a: SCOP_d3uyoa_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
automated matches
(32)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d3uyod_
D:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
automated matches
(15)
Human (Homo sapiens) [TaxId: 9606]
(11)
2a
d3uyoa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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