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3UX7
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (23 KB)
Biol.Unit 3 (22 KB)
Biol.Unit 4 (23 KB)
Biol.Unit 5 (22 KB)
Biol.Unit 6 (22 KB)
Biol.Unit 7 (23 KB)
Biol.Unit 8 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DIMERIC MYOTOXIC COMPONENT OF THE VIPERA AMMODYTES MERIDIONALIS VENOM REVEALS DETERMINANTS OF MYOTOXICITY AND MEMBRANE DAMAGING ACTIVITY
Authors
:
D. Georgieva, M. Coronado, D. Oberthuer, F. Buck, D. Duhalov, R. K. Arni C. Betzel
Date
:
04 Dec 11 (Deposition) - 25 Apr 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Toxin, Snake Venom, Ser49 Myotoxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Georgieva, M. Coronado, D. Oberthur, F. Buck, D. Duhalov, R. K. Arni C. Betzel
Crystal Structure Of A Dimeric Ser49 Pla(2)-Like Myotoxic Component Of The Vipera Ammodytes Meridionalis Venomics Reveals Determinants Of Myotoxicity And Membrane Damaging Activity.
Mol Biosyst V. 8 1405 2012
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Hetero Components
(1, 19)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
19
Ligand/Ion
SULFATE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:39 , ARG A:42 , LYS E:105 , LYS E:108
BINDING SITE FOR RESIDUE SO4 A 123
02
AC2
SOFTWARE
TYR A:21 , CYS A:28 , GLY A:29
BINDING SITE FOR RESIDUE SO4 A 124
03
AC3
SOFTWARE
LYS A:15 , ASN A:16 , THR A:19 , SER A:20 , HOH A:127 , ALA E:91
BINDING SITE FOR RESIDUE SO4 A 125
04
AC4
SOFTWARE
CYS A:75 , GLU A:87 , LYS E:7
BINDING SITE FOR RESIDUE SO4 A 126
05
AC5
SOFTWARE
LYS B:121 , HOH B:128 , ARG H:112
BINDING SITE FOR RESIDUE SO4 B 123
06
AC6
SOFTWARE
ARG B:42 , LYS H:105
BINDING SITE FOR RESIDUE SO4 B 124
07
AC7
SOFTWARE
LEU C:18
BINDING SITE FOR RESIDUE SO4 C 123
08
AC8
SOFTWARE
LYS C:35 , LYS F:97 , LYS G:114
BINDING SITE FOR RESIDUE SO4 C 124
09
AC9
SOFTWARE
LYS D:15 , ASN D:16 , THR D:19 , SER D:20 , HOH D:131 , ALA F:91
BINDING SITE FOR RESIDUE SO4 D 123
10
BC1
SOFTWARE
ALA D:39 , ARG D:42 , LYS F:108
BINDING SITE FOR RESIDUE SO4 D 124
11
BC2
SOFTWARE
LYS A:105 , LYS A:108 , HOH A:134 , ALA E:39 , ARG E:42 , HOH E:134
BINDING SITE FOR RESIDUE SO4 E 123
12
BC3
SOFTWARE
SER F:119
BINDING SITE FOR RESIDUE SO4 F 123
13
BC4
SOFTWARE
LYS D:7 , GLN D:10 , CYS F:75 , GLU F:87 , LYS F:90
BINDING SITE FOR RESIDUE SO4 F 124
14
BC5
SOFTWARE
LYS D:105 , ARG F:42
BINDING SITE FOR RESIDUE SO4 F 125
15
BC6
SOFTWARE
LYS C:108 , ALA G:39 , ARG G:42
BINDING SITE FOR RESIDUE SO4 G 123
16
BC7
SOFTWARE
HOH G:130
BINDING SITE FOR RESIDUE SO4 G 124
17
BC8
SOFTWARE
ALA C:91 , ASN G:16 , THR G:19 , SER G:20
BINDING SITE FOR RESIDUE SO4 G 125
18
BC9
SOFTWARE
GLY H:29 , LEU H:30 , HOH H:129
BINDING SITE FOR RESIDUE SO4 H 123
19
CC1
SOFTWARE
LYS H:37 , TYR H:107 , TYR H:110
BINDING SITE FOR RESIDUE SO4 H 124
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ux7a_ (A:)
1b: SCOP_d3ux7b_ (B:)
1c: SCOP_d3ux7c_ (C:)
1d: SCOP_d3ux7d_ (D:)
1e: SCOP_d3ux7e_ (E:)
1f: SCOP_d3ux7f_ (F:)
1g: SCOP_d3ux7g_ (G:)
1h: SCOP_d3ux7h_ (H:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
automated matches
(75)
Vipera ammodytes [TaxId: 73841]
(1)
1a
d3ux7a_
A:
1b
d3ux7b_
B:
1c
d3ux7c_
C:
1d
d3ux7d_
D:
1e
d3ux7e_
E:
1f
d3ux7f_
F:
1g
d3ux7g_
G:
1h
d3ux7h_
H:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain H
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (161 KB)
Header - Asym.Unit
Biol.Unit 1 (23 KB)
Header - Biol.Unit 1
Biol.Unit 2 (23 KB)
Header - Biol.Unit 2
Biol.Unit 3 (22 KB)
Header - Biol.Unit 3
Biol.Unit 4 (23 KB)
Header - Biol.Unit 4
Biol.Unit 5 (22 KB)
Header - Biol.Unit 5
Biol.Unit 6 (22 KB)
Header - Biol.Unit 6
Biol.Unit 7 (23 KB)
Header - Biol.Unit 7
Biol.Unit 8 (22 KB)
Header - Biol.Unit 8
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