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3UWL
Asym. Unit
Info
Asym.Unit (439 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENTEROCCOCUS FAECALIS THYMIDYLATE SYNTHASE (EFTS) IN COMPLEX WITH 5-FORMYL TETRAHYDROFOLATE
Authors
:
C. Pozzi, A. Catalano, D. Cortesi, R. Luciani, S. Ferrari, T. Fritz, M. P S. Mangani
Date
:
02 Dec 11 (Deposition) - 29 Aug 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Methyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Pozzi, S. Ferrari, D. Cortesi, R. Luciani, R. M. Stroud, A. Catalano M. P. Costi, S. Mangani
The Structure Of Enterococcus Faecalis Thymidylate Synthase Provides Clues About Folate Bacterial Metabolism.
Acta Crystallogr. , Sect. D V. 68 1232 2012
[
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
3a: N-[4-({[(6S)-2-AMINO-5-FORMYL-4-OX... (FOZa)
3b: N-[4-({[(6S)-2-AMINO-5-FORMYL-4-OX... (FOZb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CME
2
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
FOZ
2
Ligand/Ion
N-[4-({[(6S)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:177 , ARG A:178 , HOH A:317 , ARG B:22 , CME B:197 , ARG B:217 , SER B:218
BINDING SITE FOR RESIDUE SO4 B 317
02
AC2
SOFTWARE
ARG A:217 , SER A:218 , ARG B:177 , ARG B:178 , HOH B:403
BINDING SITE FOR RESIDUE SO4 B 318
03
AC3
SOFTWARE
LEU B:55 , ILE B:80 , TRP B:81 , TRP B:84 , LEU B:194 , CME B:197 , ASP B:220 , LEU B:223 , GLY B:224 , PHE B:227 , ASN B:228 , ILE B:313 , ALA B:314 , HOH B:344 , HOH B:358 , HOH B:361 , HOH B:365 , HOH B:416 , HOH B:431 , HOH B:434 , HOH B:435 , HOH B:439 , HOH B:440 , HOH B:511
BINDING SITE FOR RESIDUE FOZ B 316
04
AC4
SOFTWARE
ARG B:50 , PRO B:307 , THR B:308
BINDING SITE FOR RESIDUE SO4 B 319
05
AC5
SOFTWARE
GLU B:168 , GLU B:242 , SER B:289 , PHE B:291 , HOH B:443 , HOH D:422
BINDING SITE FOR RESIDUE EDO B 320
06
AC6
SOFTWARE
GLU B:3 , ALA B:7
BINDING SITE FOR RESIDUE EDO B 321
07
AC7
SOFTWARE
PHE B:18 , TYR B:28 , GLN B:261 , GLN D:268 , HOH D:741
BINDING SITE FOR RESIDUE EDO B 322
08
AC8
SOFTWARE
LEU B:13 , TYR B:28 , HOH B:409 , LEU D:13 , TYR D:28
BINDING SITE FOR RESIDUE EDO B 323
09
AC9
SOFTWARE
ALA C:4 , MET C:35 , ARG C:36 , HOH C:773 , HOH C:795
BINDING SITE FOR RESIDUE EDO C 318
10
BC1
SOFTWARE
LEU C:13 , TYR C:28 , HOH C:374
BINDING SITE FOR RESIDUE EDO C 319
11
BC2
SOFTWARE
LEU C:194 , ARG C:217 , SER C:218 , HOH C:329 , ARG D:177 , ARG D:178
BINDING SITE FOR RESIDUE SO4 C 317
12
BC3
SOFTWARE
ARG C:177 , ARG C:178 , ARG D:22 , CME D:197 , ARG D:217 , SER D:218 , HOH D:374
BINDING SITE FOR RESIDUE SO4 D 317
13
BC4
SOFTWARE
LEU D:55 , ILE D:80 , TRP D:81 , TRP D:84 , LEU D:194 , CME D:197 , ASP D:220 , LEU D:223 , GLY D:224 , PHE D:227 , ASN D:228 , ILE D:313 , ALA D:314 , HOH D:344 , HOH D:349 , HOH D:351 , HOH D:381 , HOH D:385 , HOH D:392 , HOH D:403 , HOH D:410 , HOH D:416 , HOH D:418 , HOH D:431 , HOH D:463 , HOH D:576 , HOH D:614
BINDING SITE FOR RESIDUE FOZ D 316
14
BC5
SOFTWARE
ARG D:50 , PRO D:307 , THR D:308
BINDING SITE FOR RESIDUE SO4 D 318
15
BC6
SOFTWARE
HOH B:384 , ALA D:164 , GLU D:168 , GLU D:242 , SER D:289 , PHE D:291 , HOH D:424
BINDING SITE FOR RESIDUE EDO D 320
16
BC7
SOFTWARE
ARG D:76 , ASP D:294 , MET D:295 , HOH D:388
BINDING SITE FOR RESIDUE EDO D 321
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_SYNTHASE (A:177-205,B:177-205,C:177-205,D:17...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_SYNTHASE
PS00091
Thymidylate synthase active site.
TYSY_ENTFA
177-205
4
A:177-205
B:177-205
C:177-205
D:177-205
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3uwla_ (A:)
1b: SCOP_d3uwlb_ (B:)
1c: SCOP_d3uwlc_ (C:)
1d: SCOP_d3uwld_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Superfamily
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Family
:
Thymidylate synthase/dCMP hydroxymethylase
(183)
Protein domain
:
automated matches
(38)
Enterococcus faecalis [TaxId: 1351]
(1)
1a
d3uwla_
A:
1b
d3uwlb_
B:
1c
d3uwlc_
C:
1d
d3uwld_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (439 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (214 KB)
Header - Biol.Unit 2
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