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3UVX
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH A DIACETYLATED HISTONE 4 PEPTIDE (H4K12ACK16AC)
Authors
:
P. Filippakopoulos, S. Picaud, T. Keates, E. Ugochukwu, F. Von Delf, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, Stru Genomics Consortium (Sgc)
Date
:
30 Nov 11 (Deposition) - 25 Jan 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bromodomain, Bromodomain Containing Protein 4, Cap, Hunk1, Mcap, Mitotic Chromosome Associated Protein, Peptide Complex, Structural Genomics Consortium, Sgc, Transcription-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
[
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]
Hetero Components
(4, 8)
Info
All Hetero Components
1a: N(6)-ACETYLLYSINE (ALYa)
1b: N(6)-ACETYLLYSINE (ALYb)
2a: 1,2-ETHANEDIOL (EDOa)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALY
2
Mod. Amino Acid
N(6)-ACETYLLYSINE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
3
Ligand/Ion
FORMIC ACID
4
NA
2
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:30 , ASN A:61 , GLN A:64 , TYR A:137 , ASN A:140
BINDING SITE FOR RESIDUE NA A 1
2
AC2
SOFTWARE
GLU A:49 , HOH A:202 , HOH A:203 , HOH A:231
BINDING SITE FOR RESIDUE NA A 2
3
AC3
SOFTWARE
ILE A:100 , ILE A:101 , LYS A:102 , THR A:103 , ASN A:135 , HOH A:226
BINDING SITE FOR RESIDUE EDO A 169
4
AC4
SOFTWARE
THR A:60 , GLN A:62 , ASN A:121 , ALA A:122 , HOH A:231
BINDING SITE FOR RESIDUE FMT A 170
5
AC5
SOFTWARE
HOH A:8 , SER A:51 , ASN A:52 , LYS A:57 , ASN A:116 , TYR A:118
BINDING SITE FOR RESIDUE FMT A 171
6
AC6
SOFTWARE
ARG A:113 , ASP A:128
BINDING SITE FOR RESIDUE FMT A 3
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H4 (B:14-17)
2: BROMODOMAIN_2 (A:75-147|-)
3: BROMODOMAIN_1 (A:80-139)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H4
PS00047
Histone H4 signature.
H4_HUMAN
15-19
1
B:14-17
2
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD4_HUMAN
75-147
368-440
1
A:75-147
-
3
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD4_HUMAN
80-139
1
A:80-139
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:42-95)
Exon 1.3 (A:96-141)
Exon 1.4 (A:142-168)
Exon 2.1 (B:11-17)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary -/2.1
6: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263377
1
ENSE00001113198
chr19:
15391262-15391075
188
BRD4_HUMAN
-
0
0
-
-
1.2
ENST00000263377
2
ENSE00001113202
chr19:
15383944-15383626
319
BRD4_HUMAN
1-95
95
1
A:42-95
54
1.3
ENST00000263377
3
ENSE00000689046
chr19:
15379853-15379716
138
BRD4_HUMAN
96-141
46
1
A:96-141
46
1.4
ENST00000263377
4
ENSE00000689047
chr19:
15378362-15378227
136
BRD4_HUMAN
142-187
46
1
A:142-168
27
1.5
ENST00000263377
5
ENSE00000689048
chr19:
15376454-15376165
290
BRD4_HUMAN
187-283
97
0
-
-
1.6
ENST00000263377
6
ENSE00000348853
chr19:
15375577-15375215
363
BRD4_HUMAN
284-404
121
0
-
-
1.7
ENST00000263377
7
ENSE00000689050
chr19:
15374359-15374231
129
BRD4_HUMAN
405-447
43
0
-
-
1.8
ENST00000263377
8
ENSE00000689051
chr19:
15367984-15367775
210
BRD4_HUMAN
448-517
70
0
-
-
1.9
ENST00000263377
9
ENSE00000689052
chr19:
15367074-15366875
200
BRD4_HUMAN
518-584
67
0
-
-
1.10
ENST00000263377
10
ENSE00000689053
chr19:
15366403-15366108
296
BRD4_HUMAN
584-683
100
0
-
-
1.11
ENST00000263377
11
ENSE00001187704
chr19:
15365073-15364963
111
BRD4_HUMAN
683-720
38
0
-
-
1.15
ENST00000263377
15
ENSE00001113203
chr19:
15355573-15355521
53
BRD4_HUMAN
720-737
18
0
-
-
1.16
ENST00000263377
16
ENSE00001055985
chr19:
15355411-15355042
370
BRD4_HUMAN
738-861
124
0
-
-
1.17
ENST00000263377
17
ENSE00001055976
chr19:
15354298-15353711
588
BRD4_HUMAN
861-1057
197
0
-
-
1.18
ENST00000263377
18
ENSE00001136676
chr19:
15350833-15350721
113
BRD4_HUMAN
1057-1094
38
0
-
-
1.19
ENST00000263377
19
ENSE00001113200
chr19:
15350632-15350470
163
BRD4_HUMAN
1095-1149
55
0
-
-
1.20
ENST00000263377
20
ENSE00001113199
chr19:
15350333-15350203
131
BRD4_HUMAN
1149-1192
44
0
-
-
1.21
ENST00000263377
21
ENSE00000951121
chr19:
15350075-15349870
206
BRD4_HUMAN
1193-1261
69
0
-
-
1.22
ENST00000263377
22
ENSE00000951122
chr19:
15349791-15349554
238
BRD4_HUMAN
1261-1340
80
0
-
-
1.23
ENST00000263377
23
ENSE00001055981
chr19:
15349256-15348301
956
BRD4_HUMAN
1341-1362
22
0
-
-
2.1
ENST00000377803
1
ENSE00001475159
chr6:
26104104-26104518
415
H4_HUMAN
1-127
127
1
B:11-17
7
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3uvxa_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d3uvxa_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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