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3UVF
Biol. Unit 2
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Asym.Unit (287 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
EXPANDING LAGALIDADG ENDONUCLEASE SCAFFOLD DIVERSITY BY RAPIDLY SURVEYING EVOLUTIONARY SEQUENCE SPACE
Authors
:
K. Jacoby, M. Metzger, B. Shen, J. Jarjour, B. Stoddard, A. Scharenberg
Date
:
29 Nov 11 (Deposition) - 29 Feb 12 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Keywords
:
Laglidagd Endonuclease, Hydrolase, Divalent Metal Ions, Hydrolase-Dna Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Jacoby, M. Metzger, B. W. Shen, M. T. Certo, J. Jarjour, B. L. Stoddard, A. M. Scharenberg
Expanding Laglidadg Endonuclease Scaffold Diversity By Rapidly Surveying Evolutionary Sequence Space.
Nucleic Acids Res. V. 40 4954 2012
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: SODIUM ION (NAa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP B:18 , ALA B:149 , DT E:417 , DA F:514 , DA F:515
BINDING SITE FOR RESIDUE CA B 301
2
AC5
SOFTWARE
LYS B:76 , ASN B:77 , LYS B:80 , HOH B:441
BINDING SITE FOR RESIDUE PEG B 302
3
AC6
SOFTWARE
ASP B:75 , ASN B:77
BINDING SITE FOR RESIDUE NA B 304
4
AC7
SOFTWARE
GLU B:150 , DT E:415 , DC E:416 , DC F:516
BINDING SITE FOR RESIDUE CA E 501
5
AC8
SOFTWARE
DG E:409 , PEG E:503
BINDING SITE FOR RESIDUE CA E 502
6
AC9
SOFTWARE
DG E:409 , CA E:502 , HOH E:625
BINDING SITE FOR RESIDUE PEG E 503
7
BC1
SOFTWARE
DC F:525 , HOH F:719 , HOH F:726
BINDING SITE FOR RESIDUE PEG F 601
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (287 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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