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3UV5
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TANDEM BROMODOMAINS OF HUMAN TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 (TAF1)
Authors
:
P. Filippakopoulos, I. Felletar, S. Picaud, T. Keates, J. Muniz, O. Gil F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, Structural Genomics Consortium (Sgc)
Date
:
29 Nov 11 (Deposition) - 18 Jan 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tandem Bromodomain, Taf1, Cell Cycle Gene 1 Protein, Tbp-Associated Factor 250 Kda, Transcription Initiation Factor Tfiid 250 Kda Subunit, Tfii-250, Structural Genomics Consortium, Sgc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:98 , HOH A:115 , ARG A:1575 , SER A:1608 , GLN A:1609
BINDING SITE FOR RESIDUE TRS A 1
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048433 (V1404I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048433
V
1383
I
TAF1_HUMAN
Polymorphism
7050748
A
V
1404
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:1418-1488|A:1541-1611)
2: BROMODOMAIN_1 (A:1423-1480|A:1546-1603)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
TAF1_HUMAN
1397-1467
1520-1590
2
A:1418-1488
A:1541-1611
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
TAF1_HUMAN
1402-1459
1525-1582
2
A:1423-1480
A:1546-1603
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.27 (A:1398-1422)
Exon 1.28 (A:1423-1482)
Exon 1.30 (A:1482-1504)
Exon 1.31a (A:1505-1545)
Exon 1.32a (A:1546-1576)
Exon 1.33 (A:1577-1605)
Exon 1.35 (A:1605-1627)
Exon 1.36 (A:1628-1652)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26a/1.27
2: Boundary 1.27/1.28
3: Boundary 1.28/1.30
4: Boundary 1.30/1.31a
5: Boundary 1.31a/1.32a
6: Boundary 1.32a/1.33
7: Boundary 1.33/1.35
8: Boundary 1.35/1.36
9: Boundary 1.36/1.38b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373790
1a
ENSE00002190552
X:70586114-70586344
231
TAF1_HUMAN
1-60
60
0
-
-
1.2
ENST00000373790
2
ENSE00001693606
X:70587349-70587463
115
TAF1_HUMAN
61-99
39
0
-
-
1.3
ENST00000373790
3
ENSE00001806491
X:70587904-70588020
117
TAF1_HUMAN
99-138
40
0
-
-
1.4
ENST00000373790
4
ENSE00001762844
X:70595017-70595136
120
TAF1_HUMAN
138-178
41
0
-
-
1.5c
ENST00000373790
5c
ENSE00001746797
X:70596863-70597041
179
TAF1_HUMAN
178-237
60
0
-
-
1.6a
ENST00000373790
6a
ENSE00001657433
X:70597453-70597671
219
TAF1_HUMAN
238-310
73
0
-
-
1.7
ENST00000373790
7
ENSE00001610045
X:70598085-70598303
219
TAF1_HUMAN
311-383
73
0
-
-
1.8
ENST00000373790
8
ENSE00001671320
X:70598674-70598881
208
TAF1_HUMAN
384-453
70
0
-
-
1.9
ENST00000373790
9
ENSE00001748084
X:70601593-70601769
177
TAF1_HUMAN
453-512
60
0
-
-
1.10
ENST00000373790
10
ENSE00001728655
X:70602386-70602513
128
TAF1_HUMAN
512-554
43
0
-
-
1.11
ENST00000373790
11
ENSE00001606772
X:70602611-70602718
108
TAF1_HUMAN
555-590
36
0
-
-
1.12
ENST00000373790
12
ENSE00001621948
X:70602841-70603014
174
TAF1_HUMAN
591-648
58
0
-
-
1.13
ENST00000373790
13
ENSE00001801775
X:70603812-70603985
174
TAF1_HUMAN
649-706
58
0
-
-
1.14
ENST00000373790
14
ENSE00001788701
X:70604795-70604899
105
TAF1_HUMAN
707-741
35
0
-
-
1.15b
ENST00000373790
15b
ENSE00001684911
X:70607111-70607311
201
TAF1_HUMAN
742-808
67
0
-
-
1.16b
ENST00000373790
16b
ENSE00001718382
X:70608087-70608228
142
TAF1_HUMAN
809-856
48
0
-
-
1.17b
ENST00000373790
17b
ENSE00001675273
X:70608588-70608718
131
TAF1_HUMAN
856-899
44
0
-
-
1.18b
ENST00000373790
18b
ENSE00001762617
X:70609435-70609515
81
TAF1_HUMAN
900-926
27
0
-
-
1.19
ENST00000373790
19
ENSE00001781380
X:70612419-70612568
150
TAF1_HUMAN
927-976
50
0
-
-
1.20
ENST00000373790
20
ENSE00001663592
X:70612725-70612844
120
TAF1_HUMAN
977-1016
40
0
-
-
1.21
ENST00000373790
21
ENSE00001765081
X:70613151-70613326
176
TAF1_HUMAN
1017-1075
59
0
-
-
1.22a
ENST00000373790
22a
ENSE00001687499
X:70613917-70614095
179
TAF1_HUMAN
1075-1135
61
0
-
-
1.23a
ENST00000373790
23a
ENSE00001652592
X:70617103-70617316
214
TAF1_HUMAN
1135-1206
72
0
-
-
1.24
ENST00000373790
24
ENSE00001801856
X:70618422-70618587
166
TAF1_HUMAN
1206-1261
56
0
-
-
1.25
ENST00000373790
25
ENSE00001592652
X:70621378-70621589
212
TAF1_HUMAN
1262-1332
71
0
-
-
1.26a
ENST00000373790
26a
ENSE00002178934
X:70626488-70626596
109
TAF1_HUMAN
1332-1368
37
0
-
-
1.27
ENST00000373790
27
ENSE00001710784
X:70627424-70627522
99
TAF1_HUMAN
1369-1401
33
1
A:1398-1422
25
1.28
ENST00000373790
28
ENSE00001716532
X:70627824-70628001
178
TAF1_HUMAN
1402-1461
60
1
A:1423-1482
60
1.30
ENST00000373790
30
ENSE00001598091
X:70641159-70641226
68
TAF1_HUMAN
1461-1483
23
1
A:1482-1504
23
1.31a
ENST00000373790
31a
ENSE00000978923
X:70642967-70643089
123
TAF1_HUMAN
1484-1524
41
1
A:1505-1545
41
1.32a
ENST00000373790
32a
ENSE00001688409
X:70643824-70643916
93
TAF1_HUMAN
1525-1555
31
1
A:1546-1576
31
1.33
ENST00000373790
33
ENSE00001733084
X:70644004-70644088
85
TAF1_HUMAN
1556-1584
29
1
A:1577-1605
29
1.35
ENST00000373790
35
ENSE00001619905
X:70674020-70674087
68
TAF1_HUMAN
1584-1606
23
1
A:1605-1627
23
1.36
ENST00000373790
36
ENSE00001702834
X:70674591-70674707
117
TAF1_HUMAN
1607-1645
39
1
A:1628-1652
25
1.38b
ENST00000373790
38b
ENSE00001803182
X:70678091-70678216
126
TAF1_HUMAN
1646-1687
42
0
-
-
1.40a
ENST00000373790
40a
ENSE00001787591
X:70679402-70679558
157
TAF1_HUMAN
1688-1740
53
0
-
-
1.41a
ENST00000373790
41a
ENSE00001689245
X:70680476-70680653
178
TAF1_HUMAN
1740-1799
60
0
-
-
1.42e
ENST00000373790
42e
ENSE00001942720
X:70683674-70685855
2182
TAF1_HUMAN
1799-1872
74
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3uv5a1 (A:1398-1518)
2a: SCOP_d3uv5a2 (A:1519-1652)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d3uv5a1
A:1398-1518
Family
:
Bromodomain
(34)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d3uv5a2
A:1519-1652
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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