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3UTR
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(1)
Title
:
HUMAN U1A/U1A PRE-MRNA 3'UTR COMPLEX (THEORETICAL MODEL)
Authors
:
L. Jovine, C. Oubridge, J. M. Avis, K. Nagai
Date
:
11 Nov 95 (Deposition) - 03 Apr 96 (Release) - 03 Apr 96 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,D,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
U1A Spliceosomal Protein, 3' Untranslated Region, Polyadenylation, Rna Recognition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Jovine, C. Oubridge, J. M. Avis, K. Nagai
Two Structurally Different Rna Molecules Are Bound By The Spliceosomal Protein U1A Using The Same Recognition Strategy.
Structure V. 4 621 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(1, 2)
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1: RRM (B:10-89,D:10-89|-)
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SNRPA_HUMAN
10-89
208-282
2
B:10-89
D:10-89
-
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (B:2-25 | D:2-25)
Exon 1.2 (B:25-82 | D:25-82)
Exon 1.3 (B:83-97 | D:83-97)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000243563
1
ENSE00001052136
chr19:
41256779-41257386
608
SNRPA_HUMAN
1-25
25
2
B:2-25
D:2-25
24
24
1.2
ENST00000243563
2
ENSE00000707951
chr19:
41263237-41263409
173
SNRPA_HUMAN
25-82
58
2
B:25-82
D:25-82
58
58
1.3
ENST00000243563
3
ENSE00000707956
chr19:
41265336-41265515
180
SNRPA_HUMAN
83-142
60
2
B:83-97
D:83-97
15
15
1.4
ENST00000243563
4
ENSE00000707961
chr19:
41268806-41268979
174
SNRPA_HUMAN
143-200
58
0
-
-
1.5
ENST00000243563
5
ENSE00000842333
chr19:
41269492-41269580
89
SNRPA_HUMAN
201-230
30
0
-
-
1.6
ENST00000243563
6
ENSE00000842334
chr19:
41270913-41271290
378
SNRPA_HUMAN
230-282
53
0
-
-
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