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3UT5
Asym. Unit
Info
Asym.Unit (664 KB)
Biol.Unit 1 (654 KB)
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(1)
Title
:
TUBULIN-COLCHICINE-USTILOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Authors
:
F. M. Ranaivoson, B. Gigant, M. Knossow
Date
:
25 Nov 11 (Deposition) - 01 Aug 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Microtubules, Tubulin, Vinca Domain, Ustiloxin, Stathmin, Structural Protein, Structural Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. M. Ranaivoson, B. Gigant, S. Berritt, M. Joullie, M. Knossow
Structural Plasticity Of Tubulin Assembly Probed By Vinca-Domain Ligands.
Acta Crystallogr. , Sect. D V. 68 927 2012
[
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: (2S,3R)-2-AZANYL-3-METHYL-3-OXIDAN... (0E5a)
2a: (BETAR)-BETA,3-DIHYDROXY-N-METHYL-... (0EAa)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
4b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
5a: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCa)
5b: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCb)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0E5
1
Mod. Amino Acid
(2S,3R)-2-AZANYL-3-METHYL-3-OXIDANYL-PENTANOIC ACID
2
0EA
1
Mod. Amino Acid
(BETAR)-BETA,3-DIHYDROXY-N-METHYL-L-TYROSINE
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
5
LOC
2
Ligand/Ion
N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OXO-6,7-DIHYDRO-5H-BENZO[D]HEPTALEN-7-YL]ETHANAMIDE
6
MG
2
Ligand/Ion
MAGNESIUM ION
7
SO4
5
Ligand/Ion
SULFATE ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:607 , HOH A:611 , HOH A:613 , HOH A:622 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:607 , HOH A:611 , HOH A:613 , HOH B:606
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
LYS A:394 , ASN B:349
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
VAL A:177 , SER A:178 , ARG A:221 , PRO A:222 , TYR A:224
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , ASN B:101 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , SER B:178 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , HOH B:602 , HOH B:603 , HOH B:605 , HOH B:624 , HOH B:628
BINDING SITE FOR RESIDUE GDP B 501
06
AC6
SOFTWARE
THR A:179 , ALA A:180 , VAL A:181 , CYS B:241 , LEU B:242 , ALA B:250 , ASP B:251 , LYS B:254 , LEU B:255 , ASN B:258 , MET B:259 , THR B:314 , ALA B:316 , ILE B:318 , ASN B:350 , LYS B:352
BINDING SITE FOR RESIDUE LOC B 502
07
AC7
SOFTWARE
THR B:223 , GLY B:225 , ARG B:278 , GLY F:4
BINDING SITE FOR RESIDUE SO4 B 503
08
AC8
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , SER C:178 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:601 , HOH C:713 , HOH C:714 , HOH C:725 , LYS D:254 , HOH D:622
BINDING SITE FOR RESIDUE GTP C 600
09
AC9
SOFTWARE
GTP C:600 , HOH C:713 , HOH C:714 , HOH C:725 , HOH D:622
BINDING SITE FOR RESIDUE MG C 601
10
BC1
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ASN D:101 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , PRO D:173 , VAL D:177 , SER D:178 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , HOH D:602 , HOH D:608 , HOH D:617 , HOH D:630 , HOH D:636
BINDING SITE FOR RESIDUE GDP D 501
11
BC2
SOFTWARE
THR C:179 , ALA C:180 , VAL C:181 , CYS D:241 , LEU D:242 , GLN D:247 , ALA D:250 , LYS D:254 , LEU D:255 , ASN D:258 , VAL D:315 , ALA D:316 , ASN D:350 , LYS D:352 , ILE D:378
BINDING SITE FOR RESIDUE LOC D 502
12
BC3
SOFTWARE
HIS D:229 , ARG D:278 , GLY D:279
BINDING SITE FOR RESIDUE SO4 D 503
13
BC4
SOFTWARE
THR D:223 , ARG D:278 , PHE D:404
BINDING SITE FOR RESIDUE SO4 D 504
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: STATHMIN_3 (E:5-141)
2: STATHMIN_1 (E:41-49)
3: STATHMIN_2 (E:73-82)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STATHMIN_3
PS51663
Stathmin-like (SLD) domain profile.
STMN4_RAT
48-189
1
E:5-141
2
STATHMIN_1
PS00563
Stathmin family signature 1.
STMN4_RAT
84-93
1
E:41-49
3
STATHMIN_2
PS01041
Stathmin family signature 2.
STMN4_RAT
117-126
1
E:73-82
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d3ut5e_ (E:)
2a: SCOP_d3ut5a2 (A:246-440)
2b: SCOP_d3ut5b2 (B:246-442)
2c: SCOP_d3ut5c2 (C:246-440)
2d: SCOP_d3ut5d2 (D:246-442)
3a: SCOP_d3ut5a1 (A:1-245)
3b: SCOP_d3ut5b1 (B:1-245)
3c: SCOP_d3ut5c1 (C:1-245)
3d: SCOP_d3ut5d1 (D:1-245)
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Classes
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d3ut5e_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Sheep (Ovis aries) [TaxId: 9940]
(8)
2a
d3ut5a2
A:246-440
2b
d3ut5b2
B:246-442
2c
d3ut5c2
C:246-440
2d
d3ut5d2
D:246-442
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Sheep (Ovis aries) [TaxId: 9940]
(8)
3a
d3ut5a1
A:1-245
3b
d3ut5b1
B:1-245
3c
d3ut5c1
C:1-245
3d
d3ut5d1
D:1-245
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Chain E
Chain F
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