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3UT1
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3
Authors
:
N. Zhong, W. Tempel, A. K. Wernimont, S. Graslund, C. H. Arrowsmith, A. M C. Bountra, J. Weigelt, P. J. Brown, Structural Genomics Consortiu
Date
:
24 Nov 11 (Deposition) - 28 Dec 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Chromatin Modification, Transcription Repression, Mbt Repeat, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Zhong, W. Tempel, A. K. Wernimont, S. Graslund, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, P. J. Brown
Crystal Structure Of The 3-Mbt Repeat Domain Of L3Mbtl3
To Be Published
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
5
Ligand/Ion
COBALT (II) ION
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
UNX
12
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:63 , HOH A:93 , HOH A:94 , HIS A:422 , HIS A:503
BINDING SITE FOR RESIDUE CO A 1
2
AC2
SOFTWARE
HOH A:100 , HIS A:404 , ASN A:407
BINDING SITE FOR RESIDUE CO A 2
3
AC3
SOFTWARE
HIS A:432
BINDING SITE FOR RESIDUE CO A 3
4
AC4
SOFTWARE
HIS A:330
BINDING SITE FOR RESIDUE CO A 4
5
AC5
SOFTWARE
HIS A:277
BINDING SITE FOR RESIDUE CO A 5
6
AC6
SOFTWARE
PRO A:355 , ASP A:381 , ASN A:384 , PHE A:387 , CYS A:389 , PHE A:405 , TRP A:408 , TYR A:412
BINDING SITE FOR RESIDUE EPE A 552
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MBT (A:232-332|A:340-439|A:448-543)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
LMBL3_HUMAN
232-332
340-439
448-543
3
A:232-332
A:340-439
A:448-543
[
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Exons
(10, 10)
Info
All Exons
Exon 1.13 (A:231-253)
Exon 1.14 (A:254-288)
Exon 1.15 (A:289-334)
Exon 1.16b (A:334-364)
Exon 1.17b (A:365-415)
Exon 1.18 (A:415-441)
Exon 1.19 (A:441-469 (gaps))
Exon 1.20 (A:470-506)
Exon 1.21b (A:507-545)
Exon 1.22 (A:545-545)
View:
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All Exon Boundaries
01: Boundary 1.12b/1.13
02: Boundary 1.13/1.14
03: Boundary 1.14/1.15
04: Boundary 1.15/1.16b
05: Boundary 1.16b/1.17b
06: Boundary 1.17b/1.18
07: Boundary 1.18/1.19
08: Boundary 1.19/1.20
09: Boundary 1.20/1.21b
10: Boundary 1.21b/1.22
11: Boundary 1.22/1.23
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5c
ENST00000368136
5c
ENSE00002182355
chr6:
130341702-130341813
112
LMBL3_HUMAN
-
0
0
-
-
1.6
ENST00000368136
6
ENSE00001409294
chr6:
130343372-130343450
79
LMBL3_HUMAN
-
0
0
-
-
1.7
ENST00000368136
7
ENSE00001411632
chr6:
130363830-130363946
117
LMBL3_HUMAN
1-34
34
0
-
-
1.8
ENST00000368136
8
ENSE00000975595
chr6:
130370427-130370538
112
LMBL3_HUMAN
35-72
38
0
-
-
1.9b
ENST00000368136
9b
ENSE00001084666
chr6:
130370901-130370975
75
LMBL3_HUMAN
72-97
26
0
-
-
1.10b
ENST00000368136
10b
ENSE00000975596
chr6:
130372394-130372553
160
LMBL3_HUMAN
97-150
54
0
-
-
1.11b
ENST00000368136
11b
ENSE00000975597
chr6:
130374004-130374136
133
LMBL3_HUMAN
150-194
45
0
-
-
1.12b
ENST00000368136
12b
ENSE00000975598
chr6:
130376316-130376400
85
LMBL3_HUMAN
195-223
29
0
-
-
1.13
ENST00000368136
13
ENSE00002162936
chr6:
130378551-130378642
92
LMBL3_HUMAN
223-253
31
1
A:231-253
23
1.14
ENST00000368136
14
ENSE00002186523
chr6:
130381181-130381285
105
LMBL3_HUMAN
254-288
35
1
A:254-288
35
1.15
ENST00000368136
15
ENSE00002186040
chr6:
130387498-130387633
136
LMBL3_HUMAN
289-334
46
1
A:289-334
46
1.16b
ENST00000368136
16b
ENSE00000975602
chr6:
130389475-130389566
92
LMBL3_HUMAN
334-364
31
1
A:334-364
31
1.17b
ENST00000368136
17b
ENSE00000975603
chr6:
130392121-130392272
152
LMBL3_HUMAN
365-415
51
1
A:365-415
51
1.18
ENST00000368136
18
ENSE00002154851
chr6:
130399703-130399779
77
LMBL3_HUMAN
415-441
27
1
A:415-441
27
1.19
ENST00000368136
19
ENSE00002160966
chr6:
130404765-130404850
86
LMBL3_HUMAN
441-469
29
1
A:441-469 (gaps)
29
1.20
ENST00000368136
20
ENSE00002177917
chr6:
130407285-130407395
111
LMBL3_HUMAN
470-506
37
1
A:470-506
37
1.21b
ENST00000368136
21b
ENSE00000975607
chr6:
130413890-130414004
115
LMBL3_HUMAN
507-545
39
1
A:507-545
39
1.22
ENST00000368136
22
ENSE00000975608
chr6:
130415410-130415512
103
LMBL3_HUMAN
545-579
35
1
A:545-545
1
1.23
ENST00000368136
23
ENSE00000975609
chr6:
130425571-130425720
150
LMBL3_HUMAN
579-629
51
0
-
-
1.24
ENST00000368136
24
ENSE00000975610
chr6:
130442024-130442103
80
LMBL3_HUMAN
629-656
28
0
-
-
1.25
ENST00000368136
25
ENSE00000975611
chr6:
130454597-130454766
170
LMBL3_HUMAN
656-712
57
0
-
-
1.26
ENST00000368136
26
ENSE00000975612
chr6:
130454988-130455050
63
LMBL3_HUMAN
713-733
21
0
-
-
1.27d
ENST00000368136
27d
ENSE00002176826
chr6:
130460755-130462584
1830
LMBL3_HUMAN
734-780
47
0
-
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3ut1a1 (A:231-339)
1b: SCOP_d3ut1a2 (A:340-447)
1c: SCOP_d3ut1a3 (A:448-545)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d3ut1a1
A:231-339
1b
d3ut1a2
A:340-447
1c
d3ut1a3
A:448-545
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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