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Asym. Unit
Info
Asym.Unit (309 KB)
Biol.Unit 1 (301 KB)
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(1)
Title
:
STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 22 BASE PAIR A/T RICH RESPONSE ELEMENT CONTAINING A TWO BASE PAIR "AT" SPACER BETWEEN HALF SITES
Authors
:
C. Chen, O. Herzberg
Date
:
22 Nov 11 (Deposition) - 01 Feb 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
B-Dna Double Helix, Zinc Binding, Beta Sandwich, Greek Key, Transcription Factor, Nucleus, Transcription Activator-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chen, N. Gorlatova, O. Herzberg
Pliable Dna Conformation Of Response Elements Bound To Transcription Factor P63.
J. Biol. Chem. V. 287 7477 2012
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:205 , HIS A:208 , CYS A:269 , CYS A:273
BINDING SITE FOR RESIDUE ZN A 901
2
AC2
SOFTWARE
CYS B:205 , HIS B:208 , CYS B:269 , CYS B:273
BINDING SITE FOR RESIDUE ZN B 901
3
AC3
SOFTWARE
CYS C:205 , HIS C:208 , CYS C:269 , CYS C:273
BINDING SITE FOR RESIDUE ZN C 901
4
AC4
SOFTWARE
CYS D:205 , HIS D:208 , CYS D:269 , CYS D:273
BINDING SITE FOR RESIDUE ZN D 901
[
close Site info
]
SAPs(SNPs)/Variants
(26, 100)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_020866 (S145L, chain A/C, )
02: VAR_020867 (A148P, chain A/C, )
03: VAR_020868 (Q165L, chain A/B/C/D, )
04: VAR_032737 (K193E, chain A/B/C/D, )
05: VAR_020869 (K194E, chain A/B/C/D, )
06: VAR_020870 (R204Q, chain A/B/C/D, )
07: VAR_020871 (R204W, chain A/B/C/D, )
08: VAR_032738 (R227Q, chain A/B/C/D, )
09: VAR_020872 (P240H, chain A/B/C/D, )
10: VAR_032739 (C269Y, chain A/B/C/D, )
11: VAR_032740 (S272N, chain A/B/C/D, )
12: VAR_032741 (R279C, chain A/B/C/D, )
13: VAR_020873 (R279H, chain A/B/C/D, )
14: VAR_032742 (R279Q, chain A/B/C/D, )
15: VAR_020874 (R280C, chain A/B/C/D, )
16: VAR_032743 (R280H, chain A/B/C/D, )
17: VAR_032744 (R280S, chain A/B/C/D, )
18: VAR_020875 (R298Q, chain A/B/C/D, )
19: VAR_020876 (R304Q, chain A/B/C/D, )
20: VAR_032745 (R304W, chain A/B/C/D, )
21: VAR_020877 (C306R, chain A/B/C/D, )
22: VAR_032746 (C308S, chain A/B/C/D, )
23: VAR_032747 (P309S, chain A/B/C/D, )
24: VAR_020878 (D312G, chain A/B/C/D, )
25: VAR_032748 (D312H, chain A/B/C/D, )
26: VAR_035127 (R313G, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020866
S
184
L
P63_HUMAN
Unclassified
---
A/C
S
145
L
02
UniProt
VAR_020867
A
187
P
P63_HUMAN
Unclassified
---
A/C
A
148
P
03
UniProt
VAR_020868
Q
204
L
P63_HUMAN
Unclassified
---
A/B/C/D
Q
165
L
04
UniProt
VAR_032737
K
232
E
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
K
193
E
05
UniProt
VAR_020869
K
233
E
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
K
194
E
06
UniProt
VAR_020870
R
243
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
204
Q
07
UniProt
VAR_020871
R
243
W
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
204
W
08
UniProt
VAR_032738
R
266
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
227
Q
09
UniProt
VAR_020872
P
279
H
P63_HUMAN
Unclassified
---
A/B/C/D
P
240
H
10
UniProt
VAR_032739
C
308
Y
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
269
Y
11
UniProt
VAR_032740
S
311
N
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
S
272
N
12
UniProt
VAR_032741
R
318
C
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
C
13
UniProt
VAR_020873
R
318
H
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
H
14
UniProt
VAR_032742
R
318
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
Q
15
UniProt
VAR_020874
R
319
C
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
280
C
16
UniProt
VAR_032743
R
319
H
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
R
280
H
17
UniProt
VAR_032744
R
319
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
280
S
18
UniProt
VAR_020875
R
337
Q
P63_HUMAN
Disease (ADULT syndrome)
---
A/B/C/D
R
298
Q
19
UniProt
VAR_020876
R
343
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
304
Q
20
UniProt
VAR_032745
R
343
W
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
304
W
21
UniProt
VAR_020877
C
345
R
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
306
R
22
UniProt
VAR_032746
C
347
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
308
S
23
UniProt
VAR_032747
P
348
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
P
309
S
24
UniProt
VAR_020878
D
351
G
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
D
312
G
25
UniProt
VAR_032748
D
351
H
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
D
312
H
26
UniProt
VAR_035127
R
352
G
P63_HUMAN
Disease (OFC8)
---
A/B/C/D
R
313
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: P53 (A:268-280,B:268-280,C:268-280,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P53
PS00348
p53 family signature.
P63_HUMAN
307-319
4
A:268-280
B:268-280
C:268-280
D:268-280
[
close PROSITE info
]
Exons
(5, 20)
Info
All Exons
Exon 1.5 (A:126-154 (gaps) | B:124-154 (gaps...)
Exon 1.7b (A:155-217 | B:155-217 | C:155-217 ...)
Exon 1.8 (A:217-255 | B:217-255 | C:217-255 ...)
Exon 1.9 (A:256-292 | B:256-292 | C:256-292 ...)
Exon 1.10b (A:292-320 | B:292-322 | C:292-320 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.5
2: Boundary 1.5/1.7b
3: Boundary 1.7b/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10b
6: Boundary 1.10b/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000264731
1b
ENSE00001343828
chr3:
189349216-189349366
151
P63_HUMAN
1-21
21
0
-
-
1.2
ENST00000264731
2
ENSE00001184835
chr3:
189455529-189455657
129
P63_HUMAN
21-64
44
0
-
-
1.3a
ENST00000264731
3a
ENSE00001184832
chr3:
189456431-189456563
133
P63_HUMAN
64-108
45
0
-
-
1.5
ENST00000264731
5
ENSE00001150001
chr3:
189526061-189526315
255
P63_HUMAN
109-193
85
4
A:126-154 (gaps)
B:124-154 (gaps)
C:125-154
D:124-154 (gaps)
32
31
30
31
1.7b
ENST00000264731
7b
ENSE00000781594
chr3:
189582021-189582207
187
P63_HUMAN
194-256
63
4
A:155-217
B:155-217
C:155-217
D:155-217
63
63
63
63
1.8
ENST00000264731
8
ENSE00001073552
chr3:
189584471-189584586
116
P63_HUMAN
256-294
39
4
A:217-255
B:217-255
C:217-255
D:217-255
39
39
39
39
1.9
ENST00000264731
9
ENSE00001073559
chr3:
189585622-189585731
110
P63_HUMAN
295-331
37
4
A:256-292
B:256-292
C:256-292
D:256-292
37
37
37
37
1.10b
ENST00000264731
10b
ENSE00000871461
chr3:
189586369-189586505
137
P63_HUMAN
331-377
47
4
A:292-320
B:292-322
C:292-320
D:292-322
29
31
29
31
1.11
ENST00000264731
11
ENSE00000871462
chr3:
189587113-189587195
83
P63_HUMAN
377-404
28
0
-
-
1.12a
ENST00000264731
12a
ENSE00000871463
chr3:
189590648-189590784
137
P63_HUMAN
405-450
46
0
-
-
1.14
ENST00000264731
14
ENSE00001005407
chr3:
189604183-189604340
158
P63_HUMAN
450-503
54
0
-
-
1.15
ENST00000264731
15
ENSE00000781605
chr3:
189607129-189607273
145
P63_HUMAN
503-551
49
0
-
-
1.16
ENST00000264731
16
ENSE00000781606
chr3:
189608578-189608671
94
P63_HUMAN
551-582
32
0
-
-
1.17f
ENST00000264731
17f
ENSE00001608550
chr3:
189611995-189615068
3074
P63_HUMAN
583-680
98
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3us0a_ (A:)
1b: SCOP_d3us0b_ (B:)
1c: SCOP_d3us0c_ (C:)
1d: SCOP_d3us0d_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
p53 DNA-binding domain-like
(80)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(39)
1a
d3us0a_
A:
1b
d3us0b_
B:
1c
d3us0c_
C:
1d
d3us0d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain E
Chain F
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