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3UQD
Asym. Unit
Info
Asym.Unit (403 KB)
Biol.Unit 1 (395 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PHOSPHOFRUCTOKINASE-2 FROM ESCHERICHIA COLI IN COMPLEX WITH SUBSTRATES AND PRODUCTS
Authors
:
H. M. Pereira, A. Caniuguir, M. Baez, R. Cabrera, J. Babul
Date
:
20 Nov 11 (Deposition) - 28 Nov 12 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Phosphofructokinases, Pfk-2, Glycolysis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. M. Pereira, A. Caniuguir, M. Baez, R. Cabrera, R. C. Garratt, J. Babu
Structure Of E. Coli Pfk2 In Complex With Substrates And Products
To Be Published
[
close entry info
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
2d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
3a: FRUCTOSE-6-PHOSPHATE (F6Pa)
3b: FRUCTOSE-6-PHOSPHATE (F6Pb)
4a: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
4b: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
F6P
2
Ligand/Ion
FRUCTOSE-6-PHOSPHATE
4
FBP
2
Ligand/Ion
BETA-FRUCTOSE-1,6-DIPHOSPHATE
5
MG
6
Ligand/Ion
MAGNESIUM ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:185 , ASN A:187 , SER A:224 , LEU A:225 , GLY A:226 , PRO A:227 , GLY A:229 , SER A:248 , THR A:251 , ALA A:254 , GLY A:255 , MET A:258 , VAL A:280 , GLY A:283 , SER A:284 , THR A:287 , MG A:403 , MG A:404 , HOH A:519 , HOH A:553 , HOH A:578 , HOH A:612 , HOH A:630 , HOH A:645 , HOH A:652 , HOH A:699 , ATP C:401 , HOH C:576 , HOH C:627
BINDING SITE FOR RESIDUE ATP A 401
02
AC2
SOFTWARE
ASP A:14 , GLY A:38 , GLY A:39 , ASN A:43 , ARG A:90 , ASN A:92 , ARG A:105 , SER A:139 , ASP A:256 , HOH A:538 , HOH A:612 , HOH A:649 , HOH A:661 , LYS C:27 , ARG C:29 , HOH C:576
BINDING SITE FOR RESIDUE F6P A 402
03
AC3
SOFTWARE
ATP A:401 , HOH A:539 , HOH A:643 , HOH A:644 , HOH C:537
BINDING SITE FOR RESIDUE MG A 403
04
AC4
SOFTWARE
ATP A:401 , HOH A:645 , HOH A:699 , ATP C:401
BINDING SITE FOR RESIDUE MG A 404
05
AC5
SOFTWARE
SER B:12 , ASP B:14 , GLY B:38 , GLY B:39 , GLY B:40 , ASN B:43 , ARG B:90 , ASN B:92 , ARG B:105 , SER B:139 , VAL B:252 , GLY B:253 , ASP B:256 , HOH B:503 , HOH B:504 , HOH B:510 , HOH B:525 , HOH B:529 , HOH B:541 , LYS D:27 , ARG D:29
BINDING SITE FOR RESIDUE FBP B 401
06
AC6
SOFTWARE
LYS B:185 , ASN B:187 , SER B:224 , LEU B:225 , GLY B:226 , PRO B:227 , GLY B:229 , SER B:248 , ALA B:254 , MET B:258 , VAL B:280 , GLY B:283 , SER B:284 , MG B:403 , HOH B:503 , HOH B:517 , HOH B:541 , HOH B:555 , HOH B:591 , HOH B:609 , HOH B:640
BINDING SITE FOR RESIDUE ADP B 402
07
AC7
SOFTWARE
ADP B:402 , HOH B:541 , HOH B:547 , HOH B:607 , HOH B:608 , HOH B:661
BINDING SITE FOR RESIDUE MG B 403
08
AC8
SOFTWARE
GLN B:21 , TYR B:23 , GLY B:26 , LYS B:27 , HOH B:532 , HOH B:550 , HOH B:560 , HOH B:561 , ALA C:99 , SER C:100 , GLU C:102 , HOH C:630 , ASN D:187 , ATP D:401 , MG D:404 , HOH D:504 , HOH D:631
BINDING SITE FOR RESIDUE ATP B 404
09
AC9
SOFTWARE
ASN A:187 , ATP A:401 , MG A:404 , HOH A:645 , ALA B:99 , SER B:100 , GLN C:21 , TYR C:23 , GLY C:26 , LYS C:27 , HOH C:537 , HOH C:539 , HOH C:543 , HOH C:582 , HOH C:624 , HOH C:627
BINDING SITE FOR RESIDUE ATP C 401
10
BC1
SOFTWARE
LYS A:27 , ARG A:29 , ASP C:14 , GLY C:38 , GLY C:39 , GLY C:40 , ASN C:43 , ARG C:90 , ASN C:92 , ARG C:105 , GLY C:138 , SER C:139 , GLY C:253 , ASP C:256 , HOH C:502 , HOH C:508 , HOH C:510 , HOH C:530 , HOH C:540 , HOH C:548 , HOH C:571 , HOH C:611
BINDING SITE FOR RESIDUE FBP C 402
11
BC2
SOFTWARE
LYS C:185 , ASN C:187 , SER C:224 , LEU C:225 , GLY C:226 , GLY C:229 , SER C:248 , ALA C:254 , MET C:258 , VAL C:280 , GLY C:283 , SER C:284 , MG C:404 , HOH C:501 , HOH C:502 , HOH C:523 , HOH C:528 , HOH C:533 , HOH C:595 , HOH C:597 , HOH C:611 , HOH C:626
BINDING SITE FOR RESIDUE ADP C 403
12
BC3
SOFTWARE
ADP C:403 , HOH C:509 , HOH C:514 , HOH C:588 , HOH C:610 , HOH C:611
BINDING SITE FOR RESIDUE MG C 404
13
BC4
SOFTWARE
ATP B:404 , LYS D:185 , ASN D:187 , SER D:224 , LEU D:225 , GLY D:226 , PRO D:227 , GLY D:229 , SER D:248 , ALA D:254 , GLY D:255 , MET D:258 , VAL D:280 , GLY D:283 , SER D:284 , MG D:403 , MG D:404 , HOH D:518 , HOH D:544 , HOH D:551 , HOH D:579 , HOH D:595 , HOH D:596 , HOH D:631 , HOH D:643
BINDING SITE FOR RESIDUE ATP D 401
14
BC5
SOFTWARE
LYS B:27 , ARG B:29 , SER D:12 , ASP D:14 , GLY D:38 , GLY D:39 , ASN D:43 , ARG D:90 , ASN D:92 , ARG D:105 , SER D:139 , ASP D:256 , HOH D:502 , HOH D:595 , HOH D:654
BINDING SITE FOR RESIDUE F6P D 402
15
BC6
SOFTWARE
ATP D:401 , HOH D:504 , HOH D:557 , HOH D:616 , HOH D:617
BINDING SITE FOR RESIDUE MG D 403
16
BC7
SOFTWARE
ATP B:404 , ASN D:187 , ATP D:401
BINDING SITE FOR RESIDUE MG D 404
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PFKB_KINASES_1 (A:38-62,B:38-62,C:38-62,D:38-62)
2: PFKB_KINASES_2 (A:250-263,B:250-263,C:250-263,D:25...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFKB_KINASES_1
PS00583
pfkB family of carbohydrate kinases signature 1.
PFKB_ECOLI
38-62
4
A:38-62
B:38-62
C:38-62
D:38-62
2
PFKB_KINASES_2
PS00584
pfkB family of carbohydrate kinases signature 2.
PFKB_ECOLI
250-263
4
A:250-263
B:250-263
C:250-263
D:250-263
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3uqda_ (A:)
2a: SCOP_d3uqdb_ (B:)
2b: SCOP_d3uqdc_ (C:)
2c: SCOP_d3uqdd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Escherichia coli K-12 [TaxId: 83333]
(5)
1a
d3uqda_
A:
Escherichia coli [TaxId: 562]
(4)
2a
d3uqdb_
B:
2b
d3uqdc_
C:
2c
d3uqdd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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