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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3UQ0
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE POST-CATALYTIC PRODUCT COMPLEX OF POLYMERASE LAMBDA WITH AN RAMP AT THE PRIMER TERMINUS.
Authors
:
R. A. Gosavi, A. F. Moon, T. A. Kunkel, L. C. Pedersen, K. Bebenek
Date
:
18 Nov 11 (Deposition) - 23 May 12 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,D,P,T
Biol. Unit 1: A,D,P,T (1x)
Keywords
:
Dna Polymerase Lambda, Ribonucleotide Incorporation, Protein Conformation, Transferase, Lyase-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. Gosavi, A. F. Moon, T. A. Kunkel, L. C. Pedersen, K. Bebenek
The Catalytic Cycle For Ribonucleotide Incorporation By Human Dna Pol Lambda
Nucleic Acids Res. V. 40 7518 2012
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
NA
1
Ligand/Ion
SODIUM ION
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:339 , ILE A:341 , ALA A:344 , DA P:5 , HOH P:122
BINDING SITE FOR RESIDUE NA A 1
2
AC2
SOFTWARE
HOH A:237 , ARG A:386 , SER A:417 , GLY A:426 , ASP A:427
BINDING SITE FOR RESIDUE SO4 A 2
3
AC3
SOFTWARE
GLY A:442 , PHE A:444 , SER A:445 , HOH A:608 , HOH A:609
BINDING SITE FOR RESIDUE SO4 A 3
4
AC4
SOFTWARE
HIS A:440 , ARG A:441 , PRO A:495 , HOH A:595 , HOH A:632
BINDING SITE FOR RESIDUE SO4 A 4
5
AC5
SOFTWARE
LYS A:347 , ARG A:478
BINDING SITE FOR RESIDUE EDO A 7
6
AC6
SOFTWARE
ARG A:364
BINDING SITE FOR RESIDUE EDO A 8
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020269 (R438W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020269
R
438
W
DPOLL_HUMAN
Polymorphism
3730477
A
R
438
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_X (A:416-435)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_X
PS00522
DNA polymerase family X signature.
DPOLL_HUMAN
416-435
1
A:416-435
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Exons
(5, 5)
Info
All Exons
Exon 1.5e (A:251-297)
Exon 1.6b (A:298-355)
Exon 1.7b (A:356-398)
Exon 1.8c (A:399-455)
Exon 1.9g (A:455-575 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5e
2: Boundary 1.5e/1.6b
3: Boundary 1.6b/1.7b
4: Boundary 1.7b/1.8c
5: Boundary 1.8c/1.9g
6: Boundary 1.9g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1k
ENST00000370169
1k
ENSE00001451987
chr10:
103347178-103347003
176
DPOLL_HUMAN
1-39
39
0
-
-
1.3
ENST00000370169
3
ENSE00001731892
chr10:
103345913-103345619
295
DPOLL_HUMAN
39-137
99
0
-
-
1.4b
ENST00000370169
4b
ENSE00001100422
chr10:
103345235-103345073
163
DPOLL_HUMAN
137-191
55
0
-
-
1.5e
ENST00000370169
5e
ENSE00001617344
chr10:
103344676-103344359
318
DPOLL_HUMAN
192-297
106
1
A:251-297
47
1.6b
ENST00000370169
6b
ENSE00002151653
chr10:
103343438-103343265
174
DPOLL_HUMAN
298-355
58
1
A:298-355
58
1.7b
ENST00000370169
7b
ENSE00001593760
chr10:
103342648-103342520
129
DPOLL_HUMAN
356-398
43
1
A:356-398
43
1.8c
ENST00000370169
8c
ENSE00001691940
chr10:
103340173-103340005
169
DPOLL_HUMAN
399-455
57
1
A:399-455
57
1.9g
ENST00000370169
9g
ENSE00001451993
chr10:
103339574-103338639
936
DPOLL_HUMAN
455-575
121
1
A:455-575 (gaps)
121
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3uq0a1 (A:251-328)
2a: SCOP_d3uq0a2 (A:329-385)
3a: SCOP_d3uq0a3 (A:386-575)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
DNA polymerase beta, N-terminal domain-like
(205)
Family
:
DNA polymerase beta, N-terminal domain-like
(183)
Protein domain
:
DNA polymerase lambda
(24)
Human (Homo sapiens) [TaxId: 9606]
(24)
1a
d3uq0a1
A:251-328
Superfamily
:
PsbU/PolX domain-like
(218)
Family
:
DNA polymerase beta-like, second domain
(190)
Protein domain
:
DNA polymerase lambda
(23)
Human (Homo sapiens) [TaxId: 9606]
(23)
2a
d3uq0a2
A:329-385
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
DNA polymerase beta-like
(218)
Protein domain
:
DNA polymerase lambda
(23)
Human (Homo sapiens) [TaxId: 9606]
(23)
3a
d3uq0a3
A:386-575
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain T
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (70 KB)
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