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3UPF
Asym. Unit
Info
Asym.Unit (491 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (165 KB)
Biol.Unit 3 (162 KB)
Biol.Unit 4 (962 KB)
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Title
:
CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE BOUND TO NF023
Authors
:
M. Milani, E. Mastrangelo, M. Bolognesi
Date
:
18 Nov 11 (Deposition) - 02 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Keywords
:
Murine Norovirus, Rna-Dependent Rna Polymerase, Transferase- Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Mastrangelo, M. Pezzullo, D. Tarantino, R. Petazzi, F. Germani, D. Kramer, I. Robel, J. Rohayem, M. Bolognesi, M. Milani
Structure-Based Inhibition Of Norovirus Rna-Dependent Rna Polymerases.
J. Mol. Biol. V. 419 198 2012
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 8-({3-[({3-[(4,6,8-TRISULFONAPHTHA... (0BUa)
1b: 8-({3-[({3-[(4,6,8-TRISULFONAPHTHA... (0BUb)
1c: 8-({3-[({3-[(4,6,8-TRISULFONAPHTHA... (0BUc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
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No.
Name
Count
Type
Full Name
1
0BU
3
Ligand/Ion
8-({3-[({3-[(4,6,8-TRISULFONAPHTHALEN-1-YL)CARBAMOYL]PHENYL}CARBAMOYL)AMINO]BENZOYL}AMINO)NAPHTHALENE-1,3,5-TRISULFONIC ACID
2
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:42 , ASP A:65 , GLN A:66 , PRO A:69 , GLU A:168 , VAL A:170 , LYS A:171 , LYS A:174 , LYS A:180 , ARG A:182 , ARG A:245 , ARG A:392 , ARG A:413 , SO4 A:516 , HOH A:687
BINDING SITE FOR RESIDUE 0BU A 600
02
AC2
SOFTWARE
THR A:244 , ARG A:245 , HOH A:560 , 0BU A:600
BINDING SITE FOR RESIDUE SO4 A 516
03
AC3
SOFTWARE
TRP B:42 , ASP B:65 , GLN B:66 , LYS B:68 , PRO B:69 , GLU B:168 , VAL B:170 , LYS B:171 , LYS B:174 , LYS B:178 , LYS B:180 , ARG B:182 , ARG B:245 , ARG B:392 , ARG B:413 , SO4 B:517 , HOH B:608
BINDING SITE FOR RESIDUE 0BU B 600
04
AC4
SOFTWARE
VAL B:322 , ARG B:326 , ASP B:328
BINDING SITE FOR RESIDUE SO4 B 516
05
AC5
SOFTWARE
TYR B:243 , THR B:244 , ARG B:245 , 0BU B:600 , HOH B:608
BINDING SITE FOR RESIDUE SO4 B 517
06
AC6
SOFTWARE
TRP C:42 , ASP C:65 , GLN C:66 , LYS C:68 , PRO C:69 , GLU C:168 , VAL C:170 , LYS C:171 , LYS C:174 , LYS C:178 , LYS C:180 , ARG C:182 , ARG C:245 , ARG C:392 , SO4 C:516 , HOH C:743
BINDING SITE FOR RESIDUE 0BU C 600
07
AC7
SOFTWARE
TYR C:243 , THR C:244 , ARG C:245 , HOH C:520 , 0BU C:600
BINDING SITE FOR RESIDUE SO4 C 516
08
AC8
SOFTWARE
GLY C:7 , ALA C:10 , ARG C:64 , HOH C:633
BINDING SITE FOR RESIDUE SO4 C 517
09
AC9
SOFTWARE
VAL C:322 , ARG C:326
BINDING SITE FOR RESIDUE SO4 C 518
10
BC1
SOFTWARE
THR C:25 , GLY C:48 , SER C:49 , SER C:58 , LEU C:59 , HOH C:610 , HOH C:695
BINDING SITE FOR RESIDUE SO4 C 519
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3upfa_ (A:)
1b: SCOP_d3upfb_ (B:)
1c: SCOP_d3upfc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3upfa_
A:
1b
d3upfb_
B:
1c
d3upfc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (491 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
Biol.Unit 2 (165 KB)
Header - Biol.Unit 2
Biol.Unit 3 (162 KB)
Header - Biol.Unit 3
Biol.Unit 4 (962 KB)
Header - Biol.Unit 4
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