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3UOU
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE KUNITZ-TYPE PROTEASE INHIBITOR SHPI-1 LYS13LEU MUTANT IN COMPLEX WITH PANCREATIC ELASTASE
Authors
:
R. Garcia-Fernandez, M. Perbandt, D. Rehders, Y. Gonzalez-Gonzalez, M. A. Chavez, C. Betzel, L. Redecke
Date
:
17 Nov 11 (Deposition) - 21 Nov 12 (Release) - 17 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Interaction, Hydrolase (Serine Protease), Kunitz-Type Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Garcia-Fernandez, M. Perbandt, D. Rehders, P. Ziegelmuller, N. Piganeau, U. Hahn, C. Betzel, M. A. Chavez, L. Redecke
Three-Dimensional Structure Of A Kunitz-Type Inhibitor In Complex With An Elastase-Like Enzyme.
J. Biol. Chem. V. 290 14154 2015
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:62 , SER A:236 , ARG A:237 , HOH A:398 , ARG B:11
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
GLY A:144 , ARG A:251 , SER A:253 , ALA A:254 , HOH A:350
BINDING SITE FOR RESIDUE SO4 A 2
03
AC3
SOFTWARE
ARG A:75 , ARG B:18 , TYR B:33 , GLY B:35
BINDING SITE FOR RESIDUE SO4 A 3
04
AC4
SOFTWARE
ALA A:115 , THR A:193 , ARG B:11
BINDING SITE FOR RESIDUE SO4 A 4
05
AC5
SOFTWARE
LYS B:8 , ARG B:11 , HOH B:59 , HOH B:72 , HOH B:101 , HOH B:178
BINDING SITE FOR RESIDUE SO4 B 56
06
AC6
SOFTWARE
HOH A:24 , GLN A:63 , SER A:128 , ARG A:237 , HOH A:279 , HOH A:306 , LYS B:8 , VAL B:9 , GLY B:10
BINDING SITE FOR RESIDUE SO4 A 6
07
AC7
SOFTWARE
ARG A:162 , GLN A:166 , ARG A:207 , HOH A:372
BINDING SITE FOR RESIDUE SO4 A 7
08
AC8
SOFTWARE
ARG A:237 , LYS B:8 , HOH B:206
BINDING SITE FOR RESIDUE SO4 B 57
09
AC9
SOFTWARE
TYR A:46 , PHE B:16 , PRO B:17 , ARG B:18
BINDING SITE FOR RESIDUE GOL B 58
10
BC1
SOFTWARE
SER A:186 , SER A:187 , SER A:188 , ARG B:50
BINDING SITE FOR RESIDUE GOL A 267
11
BC2
SOFTWARE
LYS A:195 , ASN A:196 , SER A:197 , HOH A:337
BINDING SITE FOR RESIDUE GOL A 268
12
BC3
SOFTWARE
GLU A:32 , ALA A:33 , GLN A:34 , ARG A:35 , ARG A:244
BINDING SITE FOR RESIDUE GOL A 269
13
BC4
SOFTWARE
LEU A:88 , ASN A:89 , LEU A:167 , ALA A:168 , GLN A:169 , HOH A:284 , HOH A:357
BINDING SITE FOR RESIDUE GOL A 5
14
BC5
SOFTWARE
ARG A:80 , TYR A:97 , HOH A:326
BINDING SITE FOR RESIDUE GOL A 270
15
BC6
SOFTWARE
SER A:187 , GLY A:191 , SER A:192
BINDING SITE FOR RESIDUE GOL A 271
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: BPTI_KUNITZ_2 (B:3-53)
2: TRYPSIN_DOM (A:27-264)
3: BPTI_KUNITZ_1 (B:31-49)
4: TRYPSIN_HIS (A:67-72)
5: TRYPSIN_SER (A:208-219)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BPTI_KUNITZ_2
PS50279
Pancreatic trypsin inhibitor (Kunitz) family profile.
VKT1_STIHL
3-53
1
B:3-53
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CELA1_PIG
27-264
1
A:27-264
3
BPTI_KUNITZ_1
PS00280
Pancreatic trypsin inhibitor (Kunitz) family signature.
VKT1_STIHL
31-49
1
B:31-49
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
CELA1_PIG
67-72
1
A:67-72
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
CELA1_PIG
208-219
1
A:208-219
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3uoua_ (A:)
2a: SCOP_d3uoub_ (B:)
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Classes
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Elastase
(123)
Pig (Sus scrofa) [TaxId: 9823]
(116)
1a
d3uoua_
A:
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Small Kunitz-type inhibitors & BPTI-like toxins
(128)
Protein domain
:
automated matches
(20)
Sea anemone (Stichodactyla helianthus) [TaxId: 6123]
(4)
2a
d3uoub_
B:
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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Asym.Unit (112 KB)
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Header - Biol.Unit 1
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