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Getting 'Biological Unit' information from database.
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3UOF
Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (640 KB)
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(1)
Title
:
MYCOBACTERIUM TUBERCULOSIS BACTERIOFERRITIN, BFRA
Authors
:
L. M. Mcmath, C. W. Goulding, Tb Structural Genomics Consortium (T
Date
:
16 Nov 11 (Deposition) - 21 Nov 12 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Bacterioferritin, Ferroxidation And Iron Storage, Cytosol, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Mcmath, C. W. Goulding
Mycobacterium Tuberculosis Bacterioferritin, Bfra
To Be Published
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
3c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
12
Ligand/Ion
FE (III) ION
2
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:47 , GLU A:51 , GLU A:94 , GLU A:127 , HIS A:130
BINDING SITE FOR RESIDUE FE A 201
02
AC2
SOFTWARE
GLU A:18 , GLU A:51 , HIS A:54 , GLU A:127
BINDING SITE FOR RESIDUE FE A 202
03
AC3
SOFTWARE
LYS A:122 , LYS B:122 , TRS B:304 , HOH B:421 , LYS D:122
BINDING SITE FOR RESIDUE TRS A 203
04
AC4
SOFTWARE
PHE A:26 , ARG A:45 , PHE A:49 , MET A:52 , GLU A:56 , ASN B:23 , PHE B:26 , PHE B:49 , MET B:52 , ARG B:53 , GLU B:56 , TYR B:71
BINDING SITE FOR RESIDUE HEM B 301
05
AC5
SOFTWARE
GLU B:18 , GLU B:51 , HIS B:54 , GLU B:127
BINDING SITE FOR RESIDUE FE B 302
06
AC6
SOFTWARE
GLU B:47 , GLU B:51 , GLU B:94 , GLU B:127 , HIS B:130
BINDING SITE FOR RESIDUE FE B 303
07
AC7
SOFTWARE
VAL A:118 , GLU A:121 , TRS A:203 , VAL B:118 , HOH B:421 , VAL D:118
BINDING SITE FOR RESIDUE TRS B 304
08
AC8
SOFTWARE
GLU C:18 , GLU C:51 , HIS C:54 , GLU C:127
BINDING SITE FOR RESIDUE FE C 201
09
AC9
SOFTWARE
GLU C:47 , GLU C:51 , GLU C:94 , GLU C:127 , HIS C:130
BINDING SITE FOR RESIDUE FE C 202
10
BC1
SOFTWARE
LEU C:19 , ILE C:22 , PHE C:26 , PHE C:49 , MET C:52 , ARG C:53 , GLU C:56 , ILE D:22 , ASN D:23 , PHE D:26 , PHE D:49 , MET D:52 , ARG D:53
BINDING SITE FOR RESIDUE HEM D 201
11
BC2
SOFTWARE
GLU D:18 , GLU D:51 , HIS D:54 , GLU D:127 , FE D:203
BINDING SITE FOR RESIDUE FE D 202
12
BC3
SOFTWARE
GLU D:51 , GLU D:94 , GLU D:127 , FE D:202
BINDING SITE FOR RESIDUE FE D 203
13
BC4
SOFTWARE
ILE E:22 , ASN E:23 , PHE E:26 , ARG E:45 , PHE E:49 , MET E:52 , ARG E:53 , LEU F:19 , ILE F:22 , PHE F:26 , PHE F:49 , MET F:52 , ARG F:53 , ALA F:55 , GLU F:56
BINDING SITE FOR RESIDUE HEM E 301
14
BC5
SOFTWARE
GLU E:51 , GLU E:94 , GLU E:127
BINDING SITE FOR RESIDUE FE E 302
15
BC6
SOFTWARE
GLU E:18 , HIS E:54 , ILE E:123 , GLU E:127
BINDING SITE FOR RESIDUE FE E 303
16
BC7
SOFTWARE
TYR F:25 , GLU F:51 , GLU F:94 , GLU F:127 , HIS F:130
BINDING SITE FOR RESIDUE FE F 201
17
BC8
SOFTWARE
GLU F:18 , GLU F:51 , HIS F:54 , GLU F:127
BINDING SITE FOR RESIDUE FE F 202
18
BC9
SOFTWARE
LYS C:122 , VAL E:118 , VAL F:118 , LYS F:122 , HOH F:309 , HOH F:310
BINDING SITE FOR RESIDUE TRS F 203
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: BACTERIOFERRITIN (A:1-19,B:1-19,C:1-19,D:1-19,E:1-19...)
2: FERRITIN_LIKE (A:1-145,B:1-145,C:1-145,D:1-145,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIOFERRITIN
PS00549
Bacterioferritin signature.
BFR_MYCTO
1-19
6
A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
BFR_MYCTU
1-19
6
A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
2
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_MYCTO
1-145
6
A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
BFR_MYCTU
1-145
6
A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3uofa_ (A:)
1b: SCOP_d3uofb_ (B:)
1c: SCOP_d3uofc_ (C:)
1d: SCOP_d3uofd_ (D:)
1e: SCOP_d3uofe_ (E:)
1f: SCOP_d3uoff_ (F:)
View:
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Folds
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Superfamilies
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Mycobacterium tuberculosis [TaxId: 1773]
(3)
1a
d3uofa_
A:
1b
d3uofb_
B:
1c
d3uofc_
C:
1d
d3uofd_
D:
1e
d3uofe_
E:
1f
d3uoff_
F:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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