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3UOB
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN THYMINE DNA GLYCOSYLASE BOUND TO SUBSTRATE ANALOG 2'-DEOXY-2'-BETA-FLUORO-CYTIDINE
Authors
:
L. Zhang, C. He
Date
:
16 Nov 11 (Deposition) - 15 Feb 12 (Release) - 03 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dsdna, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Zhang, X. Lu, J. Lu, H. Liang, Q. Dai, G. L. Xu, C. Luo, H. Jiang, C. He
Thymine Dna Glycosylase Specifically Recognizes 5-Carboxylcytosine-Modified Dna.
Nat. Chem. Biol. V. 8 328 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 4-AMINO-1-(2-DEOXY-2-FLUORO-5-O-PH... (1FCa)
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Label:
No.
Name
Count
Type
Full Name
1
1FC
1
Mod. Nucleotide
4-AMINO-1-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-2-OXO-1,2-DIHYDROPYRIMIDINE-5-CARBOXYLIC ACID
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018892 (G199S, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018892
G
199
S
TDG_HUMAN
Polymorphism
4135113
A/B
G
199
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(6, 12)
Info
All Exons
Exon 1.3a (A:123-136 | B:123-136)
Exon 1.4 (A:137-160 | B:137-160)
Exon 1.5 (A:160-205 | B:160-205)
Exon 1.6 (A:205-233 | B:205-233)
Exon 1.7 (A:233-264 | B:233-264)
Exon 1.8 (A:265-303 | B:265-304 (gaps))
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1: Boundary 1.2/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000392872
1
ENSE00002180300
chr12:
104359593-104359838
246
TDG_HUMAN
1-8
8
0
-
-
1.2
ENST00000392872
2
ENSE00001735126
chr12:
104370696-104370838
143
TDG_HUMAN
8-56
49
0
-
-
1.3a
ENST00000392872
3a
ENSE00001772150
chr12:
104373609-104373850
242
TDG_HUMAN
56-136
81
2
A:123-136
B:123-136
14
14
1.4
ENST00000392872
4
ENSE00001675345
chr12:
104374671-104374740
70
TDG_HUMAN
137-160
24
2
A:137-160
B:137-160
24
24
1.5
ENST00000392872
5
ENSE00001666484
chr12:
104376577-104376712
136
TDG_HUMAN
160-205
46
2
A:160-205
B:160-205
46
46
1.6
ENST00000392872
6
ENSE00000937845
chr12:
104376914-104376996
83
TDG_HUMAN
205-233
29
2
A:205-233
B:205-233
29
29
1.7
ENST00000392872
7
ENSE00000937846
chr12:
104377073-104377167
95
TDG_HUMAN
233-264
32
2
A:233-264
B:233-264
32
32
1.8
ENST00000392872
8
ENSE00000937847
chr12:
104378527-104378698
172
TDG_HUMAN
265-322
58
2
A:265-303
B:265-304 (gaps)
39
40
1.9
ENST00000392872
9
ENSE00000937848
chr12:
104379381-104379506
126
TDG_HUMAN
322-364
43
0
-
-
1.10
ENST00000392872
10
ENSE00001301388
chr12:
104380726-104382655
1930
TDG_HUMAN
364-410
47
0
-
-
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Pfam Domains
(0, 0)
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Asym.Unit (84 KB)
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