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3UO8
Asym. Unit
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Asym.Unit (367 KB)
Biol.Unit 1 (183 KB)
Biol.Unit 2 (182 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MALT1 PARACASPASE (P1 FORM)
Authors
:
P. D. Jeffrey, J. W. Yu, Y. Shi
Date
:
16 Nov 11 (Deposition) - 21 Dec 11 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : B,C,L,M
Biol. Unit 1: B,L (1x)
Biol. Unit 2: M (1x)
Keywords
:
Paracaspase, Lymphoma, Nf-Kb Signalling, Caspase Fold, Immunoglobulin Fold, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Yu, P. D. Jeffrey, J. Y. Ha, X. Yang, Y. Shi
Crystal Structure Of The Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 (Malt1) Paracaspase Region.
Proc. Natl. Acad. Sci. Usa V. 108 21004 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU B:359 , ALA B:361 , PRO B:362 , ASP B:365 , GLY B:414 , HIS B:415 , GLY B:416 , ASP B:462 , CYS B:464 , GLU B:497 , ALA B:498 , PHE B:499 , GLU B:500 , GLN B:502 , HOH L:84 , HOH L:174
BINDING SITE FOR CHAIN L OF Z-VAL-ARG-PRO-DL-ARG -FLUOROMETHYLKETONE
2
AC2
SOFTWARE
HOH C:87 , HOH C:181 , LYS C:360 , ALA C:361 , PRO C:362 , ASP C:365 , ALA C:413 , GLY C:414 , HIS C:415 , GLY C:416 , ASP C:462 , CYS C:464 , GLU C:497 , ALA C:498 , PHE C:499 , GLU C:500 , ILE C:501 , GLN C:502 , HOH M:29
BINDING SITE FOR CHAIN M OF Z-VAL-ARG-PRO-DL-ARG -FLUOROMETHYLKETONE
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048620 (I641V, chain B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048620
I
641
V
MALT1_HUMAN
Polymorphism
35533328
B/C
I
641
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (B:341-419,C:341-419)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
MALT1_HUMAN
341-419
2
B:341-419
C:341-419
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Exons
(9, 18)
Info
All Exons
Exon 1.9 (B:338-340 | C:338-340)
Exon 1.10 (B:340-408 | C:340-408)
Exon 1.11 (B:408-467 | C:408-467)
Exon 1.12 (B:467-492 | C:467-492)
Exon 1.13 (B:492-535 | C:492-535)
Exon 1.14 (B:535-585 (gaps) | C:535-585 (gaps...)
Exon 1.15 (B:585-637 | C:585-637)
Exon 1.16 (B:638-679 | C:638-679 (gaps))
Exon 1.17c (B:680-715 | C:680-718 (gaps))
View:
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All Exon Boundaries
01: Boundary 1.8/1.9
02: Boundary 1.9/1.10
03: Boundary 1.10/1.11
04: Boundary 1.11/1.12
05: Boundary 1.12/1.13
06: Boundary 1.13/1.14
07: Boundary 1.14/1.15
08: Boundary 1.15/1.16
09: Boundary 1.16/1.17c
10: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000348428
1a
ENSE00001323530
chr18:
56338618-56339084
467
MALT1_HUMAN
1-70
70
0
-
-
1.2
ENST00000348428
2
ENSE00001271777
chr18:
56348402-56348568
167
MALT1_HUMAN
70-126
57
0
-
-
1.3b
ENST00000348428
3b
ENSE00001144898
chr18:
56363598-56363719
122
MALT1_HUMAN
126-166
41
0
-
-
1.4
ENST00000348428
4
ENSE00001159671
chr18:
56367673-56367823
151
MALT1_HUMAN
167-217
51
0
-
-
1.5
ENST00000348428
5
ENSE00001159666
chr18:
56376610-56376788
179
MALT1_HUMAN
217-276
60
0
-
-
1.6
ENST00000348428
6
ENSE00001159661
chr18:
56377208-56377304
97
MALT1_HUMAN
277-309
33
0
-
-
1.7
ENST00000348428
7
ENSE00001159656
chr18:
56378153-56378185
33
MALT1_HUMAN
309-320
12
0
-
-
1.8
ENST00000348428
8
ENSE00001159649
chr18:
56381315-56381341
27
MALT1_HUMAN
320-329
10
0
-
-
1.9
ENST00000348428
9
ENSE00001159645
chr18:
56383167-56383199
33
MALT1_HUMAN
329-340
12
2
B:338-340
C:338-340
3
3
1.10
ENST00000348428
10
ENSE00001159640
chr18:
56390280-56390483
204
MALT1_HUMAN
340-408
69
2
B:340-408
C:340-408
69
69
1.11
ENST00000348428
11
ENSE00001159634
chr18:
56400629-56400806
178
MALT1_HUMAN
408-467
60
2
B:408-467
C:408-467
60
60
1.12
ENST00000348428
12
ENSE00001159625
chr18:
56401539-56401613
75
MALT1_HUMAN
467-492
26
2
B:467-492
C:467-492
26
26
1.13
ENST00000348428
13
ENSE00001159620
chr18:
56402434-56402561
128
MALT1_HUMAN
492-535
44
2
B:492-535
C:492-535
44
44
1.14
ENST00000348428
14
ENSE00001159617
chr18:
56409097-56409246
150
MALT1_HUMAN
535-585
51
2
B:535-585 (gaps)
C:535-585 (gaps)
51
51
1.15
ENST00000348428
15
ENSE00001159612
chr18:
56411570-56411727
158
MALT1_HUMAN
585-637
53
2
B:585-637
C:585-637
53
53
1.16
ENST00000348428
16
ENSE00001159607
chr18:
56412898-56413023
126
MALT1_HUMAN
638-679
42
2
B:638-679
C:638-679 (gaps)
42
42
1.17c
ENST00000348428
17c
ENSE00001331691
chr18:
56414637-56421130
6494
MALT1_HUMAN
680-824
145
2
B:680-715
C:680-718 (gaps)
36
39
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