PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3UNH
Asym. Unit
Info
Asym.Unit (2.0 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MOUSE 20S IMMUNOPROTEASOME
Authors
:
E. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. Kirk, M. Groettrup, M.
Date
:
15 Nov 11 (Deposition) - 29 Feb 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
20S Proteasome Comprises 28 Subunits, Protease, Cytosol, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. J. Kirk, M. Groettrup, M. Groll
Immuno- And Constitutive Proteasome Crystal Structures Reveal Differences In Substrate And Inhibitor Specificity.
Cell(Cambridge, Mass. ) V. 148 727 2012
[
close entry info
]
Hetero Components
(3, 47)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
23
Ligand/Ion
CHLORIDE ION
2
IOD
14
Ligand/Ion
IODIDE ION
3
K
10
Ligand/Ion
POTASSIUM ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY N:47
BINDING SITE FOR RESIDUE IOD N 200
02
AC2
SOFTWARE
GLY b:47 , HOH b:401
BINDING SITE FOR RESIDUE IOD b 200
03
AC3
SOFTWARE
SER H:129
BINDING SITE FOR RESIDUE IOD H 235
04
AC4
SOFTWARE
ARG O:219
BINDING SITE FOR RESIDUE IOD O 234
05
AC5
SOFTWARE
ARG A:219
BINDING SITE FOR RESIDUE IOD A 234
06
AC6
SOFTWARE
LYS E:27 , GLY E:159
BINDING SITE FOR RESIDUE IOD E 261
07
AC7
SOFTWARE
GLY C:161
BINDING SITE FOR RESIDUE IOD C 248
08
AC8
SOFTWARE
HOH T:257
BINDING SITE FOR RESIDUE K T 255
09
AC9
SOFTWARE
HOH F:295
BINDING SITE FOR RESIDUE K F 255
10
BC1
SOFTWARE
HOH a:224
BINDING SITE FOR RESIDUE K b 202
11
BC2
SOFTWARE
ARG Y:30 , HOH Y:406
BINDING SITE FOR RESIDUE K Y 206
12
BC3
SOFTWARE
GLN S:13 , HOH S:269 , HOH S:348
BINDING SITE FOR RESIDUE K S 261
13
BC4
SOFTWARE
THR H:86
BINDING SITE FOR RESIDUE K H 236
14
BC5
SOFTWARE
GLN E:13 , HOH E:271
BINDING SITE FOR RESIDUE K E 262
15
BC6
SOFTWARE
ASN K:38 , TYR K:67
BINDING SITE FOR RESIDUE K K 206
16
BC7
SOFTWARE
GLU C:98 , HOH C:258
BINDING SITE FOR RESIDUE K C 249
17
BC8
SOFTWARE
ALA V:59 , LYS V:62 , ILE V:82 , THR V:86
BINDING SITE FOR RESIDUE CL V 236
18
BC9
SOFTWARE
LYS S:27 , GLY S:159
BINDING SITE FOR RESIDUE CL S 262
19
CC1
SOFTWARE
HOH M:461 , HIS N:97 , MET N:115 , GLY N:128
BINDING SITE FOR RESIDUE CL N 202
20
CC2
SOFTWARE
ARG V:19 , GLY V:171
BINDING SITE FOR RESIDUE CL V 237
21
CC3
SOFTWARE
SER A:6 , PHE A:7 , ARG C:4
BINDING SITE FOR RESIDUE CL A 235
22
CC4
SOFTWARE
PHE O:7 , ARG Q:4
BINDING SITE FOR RESIDUE CL Q 248
23
CC5
SOFTWARE
GLY Q:161 , HOH Q:260
BINDING SITE FOR RESIDUE CL Q 249
24
CC6
SOFTWARE
HIS b:97 , MET b:115 , GLY b:127 , GLY b:128
BINDING SITE FOR RESIDUE CL b 203
25
CC7
SOFTWARE
HOH M:472
BINDING SITE FOR RESIDUE CL M 220
26
CC8
SOFTWARE
ARG K:30
BINDING SITE FOR RESIDUE CL K 207
27
CC9
SOFTWARE
ARG L:71
BINDING SITE FOR RESIDUE CL L 214
28
DC1
SOFTWARE
LYS a:64
BINDING SITE FOR RESIDUE CL a 221
29
DC2
SOFTWARE
ARG H:19 , GLY H:171
BINDING SITE FOR RESIDUE CL H 237
30
DC3
SOFTWARE
HOH M:247
BINDING SITE FOR RESIDUE CL N 203
31
DC4
SOFTWARE
ASN P:68 , GLU P:69 , GLN P:94 , LEU P:97 , HOH P:262 , HOH P:265
BINDING SITE FOR RESIDUE CL P 261
32
DC5
SOFTWARE
ARG Z:71
BINDING SITE FOR RESIDUE CL Z 214
33
DC6
SOFTWARE
PHE U:28 , LYS U:152 , ASP U:154 , HOH U:247
BINDING SITE FOR RESIDUE CL U 246
34
DC7
SOFTWARE
HIS D:147
BINDING SITE FOR RESIDUE CL D 235
35
DC8
SOFTWARE
LYS G:152 , ASP G:154 , GLN G:171
BINDING SITE FOR RESIDUE CL G 246
36
DC9
SOFTWARE
ASN B:68 , GLU B:69 , LEU B:97
BINDING SITE FOR RESIDUE CL B 261
37
EC1
SOFTWARE
ILE R:162
BINDING SITE FOR RESIDUE CL R 234
38
EC2
SOFTWARE
GLY E:29
BINDING SITE FOR RESIDUE CL E 263
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PSB9_MOUSE_001 (R40H, chain N/b, )
2: VAR_PSB9_MOUSE_002 (R106C, chain N/b, )
3: VAR_PSB9_MOUSE_003 (N157D, chain N/b, )
4: VAR_PSB8_MOUSE_001 (G200R, chain K/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PSB9_MOUSE_001
*
R
60
H
PSB9_MOUSE
---
---
N/b
R
40
H
2
UniProt
VAR_PSB9_MOUSE_002
*
R
126
C
PSB9_MOUSE
---
---
N/b
R
106
C
3
UniProt
VAR_PSB9_MOUSE_003
*
N
177
D
PSB9_MOUSE
---
---
N/b
N
157
D
4
UniProt
VAR_PSB8_MOUSE_001
*
G
272
R
PSB8_MOUSE
---
---
K/Y
G
200
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (J:1-183,X:1-183,I:7-189,W:7-189,L:...)
2: PROTEASOME_ALPHA_1 (C:2-24,Q:2-24,B:4-26,P:4-26,A:5-27...)
3: PROTEASOME_BETA_1 (J:5-52,X:5-52,I:11-58,W:11-58,N:4-...)
4: PROTEASOME_ALPHA_2 (C:17-228,Q:17-228,B:19-236,P:19-23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
PSB2_MOUSE
1-183
2
J:1-183
X:1-183
PSB3_MOUSE
8-190
2
I:7-189
W:7-189
PSB1_MOUSE
36-225
2
L:9-198
Z:9-198
PSB4_MOUSE
53-237
2
M:8-192
a:8-192
2
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA7_MOUSE
3-25
2
C:2-24
Q:2-24
PSA4_MOUSE
5-27
2
B:4-26
P:4-26
PSA2_MOUSE
6-28
2
A:5-27
O:5-27
PSA1_MOUSE
6-28
2
E:3-25
S:3-25
PSA3_MOUSE
8-30
2
F:7-29
T:7-29
PSA6_MOUSE
9-31
2
G:8-30
U:8-30
3
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB2_MOUSE
5-52
2
J:5-52
X:5-52
PSB3_MOUSE
12-59
2
I:11-58
W:11-58
PSB9_MOUSE
24-71
2
N:4-51
b:4-51
PSB1_MOUSE
40-87
2
L:13-60
Z:13-60
PSB10_MOUSE
43-90
2
H:4-51
V:4-51
PSB4_MOUSE
57-104
2
M:12-59
a:12-59
PSB8_MOUSE
76-123
2
K:4-51
Y:4-51
4
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA7_MOUSE
18-229
2
C:17-228
Q:17-228
PSA4_MOUSE
20-237
2
B:19-236
P:19-236
PSA2_MOUSE
21-230
2
A:20-229
O:20-229
PSA1_MOUSE
21-233
2
E:18-230
S:18-230
PSA5_MOUSE
23-238
2
D:15-230
R:15-230
PSA3_MOUSE
23-237
2
F:22-236
T:22-236
PSA6_MOUSE
24-239
2
G:23-238
U:23-238
[
close PROSITE info
]
Exons
(12, 24)
Info
All Exons
Exon 1.2a (G:1-25 | U:1-25)
Exon 1.3b (G:25-56 | U:25-56)
Exon 1.4 (G:57-84 | U:57-84)
Exon 1.5 (G:84-136 | U:84-136)
Exon 1.6b (G:136-195 | U:136-195)
Exon 1.7 (G:196-227 | U:196-227)
Exon 1.8c (G:227-243 | U:227-243)
Exon 2.2 (I:1-62 | W:1-62)
Exon 2.3a (I:62-98 | W:62-98)
Exon 2.4 (I:98-157 | W:98-157)
Exon 2.5b (I:158-189 | W:158-189)
Exon 2.6 (I:189-204 | W:189-204)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3b
03: Boundary 1.3b/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6b
06: Boundary 1.6b/1.7
07: Boundary 1.7/1.8c
08: Boundary 1.8c/-
09: Boundary 2.1a/2.2
10: Boundary 2.2/2.3a
11: Boundary 2.3a/2.4
12: Boundary 2.4/2.5b
13: Boundary 2.5b/2.6
14: Boundary 2.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSMUST00000021412
2a
ENSMUSE00000864920
chr12:
56499762-56499978
217
PSA6_MOUSE
1-26
26
2
G:1-25
U:1-25
25
25
1.3b
ENSMUST00000021412
3b
ENSMUSE00000113995
chr12:
56508456-56508550
95
PSA6_MOUSE
26-57
32
2
G:25-56
U:25-56
32
32
1.4
ENSMUST00000021412
4
ENSMUSE00000114000
chr12:
56508989-56509070
82
PSA6_MOUSE
58-85
28
2
G:57-84
U:57-84
28
28
1.5
ENSMUST00000021412
5
ENSMUSE00000307251
chr12:
56511114-56511269
156
PSA6_MOUSE
85-137
53
2
G:84-136
U:84-136
53
53
1.6b
ENSMUST00000021412
6b
ENSMUSE00000113999
chr12:
56513174-56513352
179
PSA6_MOUSE
137-196
60
2
G:136-195
U:136-195
60
60
1.7
ENSMUST00000021412
7
ENSMUSE00000504670
chr12:
56515391-56515485
95
PSA6_MOUSE
197-228
32
2
G:196-227
U:196-227
32
32
1.8c
ENSMUST00000021412
8c
ENSMUSE00000850713
chr12:
56519224-56519441
218
PSA6_MOUSE
228-246
19
2
G:227-243
U:227-243
17
17
2.1a
ENSMUST00000103147
1a
ENSMUSE00000732455
chr11:
97564713-97564804
92
PSB3_MOUSE
1-1
1
0
-
-
2.2
ENSMUST00000103147
2
ENSMUSE00000661401
chr11:
97565102-97565286
185
PSB3_MOUSE
2-63
62
2
I:1-62
W:1-62
62
62
2.3a
ENSMUST00000103147
3a
ENSMUSE00000661400
chr11:
97568112-97568219
108
PSB3_MOUSE
63-99
37
2
I:62-98
W:62-98
37
37
2.4
ENSMUST00000103147
4
ENSMUSE00000661399
chr11:
97572416-97572593
178
PSB3_MOUSE
99-158
60
2
I:98-157
W:98-157
60
60
2.5b
ENSMUST00000103147
5b
ENSMUSE00000661398
chr11:
97573751-97573845
95
PSB3_MOUSE
159-190
32
2
I:158-189
W:158-189
32
32
2.6
ENSMUST00000103147
6
ENSMUSE00000661397
chr11:
97574707-97574814
108
PSB3_MOUSE
190-205
16
2
I:189-204
W:189-204
16
16
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain a
Chain b
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (2.0 MB)
Header - Asym.Unit
Biol.Unit 1 (2.0 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3UNH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help