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3UNB
Biol. Unit 1
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Asym.Unit (4.1 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
Biol.Unit 2, α-C (2.0 MB)
Biol.Unit 2 (2.0 MB)
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(1)
Title
:
MOUSE CONSTITUTIVE 20S PROTEASOME IN COMPLEX WITH PR-957
Authors
:
E. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. Kirk, M. Groettrup, M.
Date
:
15 Nov 11 (Deposition) - 29 Feb 12 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Biol. Unit 2: c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4 (1x)
Keywords
:
20S Proteasome Comprises 28 Subunits; Each Subunit Adopts The Fold Of An Antiparallel Beta-Sheet Flanked By Helices, Protease, Regulatory Complexes, Covalent Binding Of Pr-957 To All Active Sites, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. J. Kirk, M. Groettrup, M. Groll
Immuno- And Constitutive Proteasome Crystal Structures Reveal Differences In Substrate And Inhibitor Specificity.
Cell(Cambridge, Mass. ) V. 148 727 2012
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ca)
1b: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cb)
1c: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cc)
1d: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cd)
1e: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ce)
1f: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cf)
1g: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cg)
1h: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ch)
1i: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ci)
1j: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cj)
1k: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ck)
1l: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
04C
6
Ligand/Ion
1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MORPHOLIN-4-YLACETYL)-L-ALANYL-O-METHYL-L-TYROSYL]AMINO}-1-PHENYL-D-XYLITOL
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR H:1 , ARG H:19 , ALA H:20 , THR H:21 , CYS H:31 , GLY H:47 , THR H:48 , ALA H:49 , GLY H:168 , ASP I:124 , ILE I:126
BINDING SITE FOR RESIDUE 04C H 301
2
AC2
SOFTWARE
THR K:1 , ARG K:19 , ALA K:20 , THR K:21 , VAL K:31 , LYS K:33 , GLY K:47 , GLY K:48 , ALA K:49 , TYR K:169 , ASP L:125
BINDING SITE FOR RESIDUE 04C K 301
3
AC3
SOFTWARE
HIS H:116 , THR N:1 , ARG N:19 , THR N:20 , THR N:21 , THR N:31 , LYS N:33 , ARG N:45 , GLY N:47 , SER N:48 , ALA N:49 , MET N:95 , SER N:130 , SER N:169 , HOH N:405 , HOH N:428
BINDING SITE FOR RESIDUE 04C N 301
4
AC4
SOFTWARE
THR V:1 , ARG V:19 , ALA V:20 , THR V:21 , CYS V:31 , LYS V:33 , ALA V:46 , GLY V:47 , ALA V:49 , SER V:129 , GLY V:168 , HOH V:403 , ASP W:124 , ILE W:126
BINDING SITE FOR RESIDUE 04C V 301
5
AC5
SOFTWARE
THR Y:1 , ARG Y:19 , ALA Y:20 , THR Y:21 , VAL Y:31 , GLY Y:47 , ALA Y:49 , SER Y:130 , TYR Y:169 , ASP Z:125 , VAL Z:127
BINDING SITE FOR RESIDUE 04C Y 301
6
AC6
SOFTWARE
HIS V:116 , THR b:1 , ARG b:19 , THR b:20 , THR b:21 , THR b:31 , ARG b:45 , SER b:46 , GLY b:47 , SER b:48 , ALA b:49 , MET b:95 , SER b:130 , SER b:169 , HOH b:404 , HOH b:405 , HOH b:407
BINDING SITE FOR RESIDUE 04C b 301
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_PSB6_MOUSE_001 (A5T, chain N/b, )
2: VAR_PSB6_MOUSE_002 (A56T, chain N/b, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PSB6_MOUSE_001
*
A
38
T
PSB6_MOUSE
---
---
N/b
A
5
T
2
UniProt
VAR_PSB6_MOUSE_002
*
A
89
T
PSB6_MOUSE
---
---
N/b
A
56
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (M:8-192,a:8-192)
2: PROTEASOME_ALPHA_1 (C:2-24,Q:2-24)
3: PROTEASOME_BETA_1 (H:4-51,V:4-51)
4: PROTEASOME_ALPHA_2 (C:17-228,Q:17-228)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
PSB2_MOUSE
1-183
2
J:1-183
X:1-183
-
-
PSB3_MOUSE
8-190
2
I:7-189
W:7-189
-
-
PSB1_MOUSE
36-225
2
-
L:9-198
Z:9-198
-
PSB4_MOUSE
53-237
2
-
M:8-192
a:8-192
-
2
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA7_MOUSE
3-25
2
C:2-24
Q:2-24
-
-
PSA4_MOUSE
5-27
2
B:4-26
P:4-26
-
-
PSA2_MOUSE
6-28
2
A:5-27
O:5-27
-
-
PSA1_MOUSE
6-28
2
E:3-25
S:3-25
-
-
PSA3_MOUSE
8-30
2
F:7-29
T:7-29
-
-
PSA6_MOUSE
9-31
2
G:8-30
U:8-30
-
-
3
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB2_MOUSE
5-52
2
J:5-52
X:5-52
-
-
PSB3_MOUSE
12-59
2
I:11-58
W:11-58
-
-
PSB6_MOUSE
37-84
2
-
N:4-51
b:4-51
-
PSB1_MOUSE
40-87
2
-
L:13-60
Z:13-60
-
PSB7_MOUSE
47-94
2
H:4-51
V:4-51
-
-
PSB4_MOUSE
57-104
2
-
M:12-59
a:12-59
-
PSB5_MOUSE
63-110
2
-
K:4-51
Y:4-51
-
4
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA7_MOUSE
18-229
2
C:17-228
Q:17-228
-
-
PSA4_MOUSE
20-237
2
B:19-236
P:19-236
-
-
PSA2_MOUSE
21-230
2
A:20-229
O:20-229
-
-
PSA1_MOUSE
21-233
2
E:18-230
S:18-230
-
-
PSA5_MOUSE
23-238
2
D:15-230
R:15-230
-
-
PSA3_MOUSE
23-237
2
F:22-236
T:22-236
-
-
PSA6_MOUSE
24-239
2
G:23-238
U:23-238
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 30)
Info
All SCOP Domains
1a: SCOP_d3unbe_ (E:)
1b: SCOP_d3unbs_ (S:)
2a: SCOP_d3unb1_ (1:)
2b: SCOP_d3unb2_ (2:)
2c: SCOP_d3unb3_ (3:)
2d: SCOP_d3unb4_ (4:)
2e: SCOP_d3unba_ (A:)
2f: SCOP_d3unbb_ (b:)
2g: SCOP_d3unbc_ (c:)
2h: SCOP_d3unbd_ (D:)
2i: SCOP_d3unbf_ (F:)
2j: SCOP_d3unbh_ (H:)
2k: SCOP_d3unbi_ (I:)
2l: SCOP_d3unbj_ (J:)
2m: SCOP_d3unbk_ (K:)
2n: SCOP_d3unbl_ (L:)
2o: SCOP_d3unbm_ (M:)
2p: SCOP_d3unbn_ (N:)
2q: SCOP_d3unbo_ (O:)
2r: SCOP_d3unbp_ (p:)
2s: SCOP_d3unbq_ (q:)
2t: SCOP_d3unbr_ (R:)
2u: SCOP_d3unbt_ (T:)
2v: SCOP_d3unbv_ (V:)
2w: SCOP_d3unbw_ (W:)
2x: SCOP_d3unbx_ (X:)
2y: SCOP_d3unby_ (Y:)
2z: SCOP_d3unbz_ (Z:)
3a: SCOP_d3unbg_ (G:)
3b: SCOP_d3unbu_ (U:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
automated matches
(34)
Protein domain
:
automated matches
(34)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d3unbe_
E:
1b
d3unbs_
S:
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d3unb1_
1:
2b
d3unb2_
2:
2c
d3unb3_
3:
2d
d3unb4_
4:
2e
d3unba_
A:
2f
d3unbb_
b:
2g
d3unbc_
c:
2h
d3unbd_
D:
2i
d3unbf_
F:
2j
d3unbh_
H:
2k
d3unbi_
I:
2l
d3unbj_
J:
2m
d3unbk_
K:
2n
d3unbl_
L:
2o
d3unbm_
M:
2p
d3unbn_
N:
2q
d3unbo_
O:
2r
d3unbp_
p:
2s
d3unbq_
q:
2t
d3unbr_
R:
2u
d3unbt_
T:
2v
d3unbv_
V:
2w
d3unbw_
W:
2x
d3unbx_
X:
2y
d3unby_
Y:
2z
d3unbz_
Z:
Protein domain
:
Proteasome alpha subunit (non-catalytic)
(66)
Mouse (Mus musculus) [TaxId: 10090]
(2)
3a
d3unbg_
G:
3b
d3unbu_
U:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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all PFAM domains
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Label:
Sorry, no Info available
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Chain M
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