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3UN4
Asym. Unit
Info
Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.1 MB)
Biol.Unit 1 (2.1 MB)
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(1)
Title
:
YEAST 20S PROTEASOME IN COMPLEX WITH PR-957 (MORPHOLINE)
Authors
:
E. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. Kirk, M. Groettrup, M.
Date
:
15 Nov 11 (Deposition) - 29 Feb 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
Proteasome, Antigen Presentation, Drug Development, Protein Degradation, Hydrolase -Hydrolase-Inhibitor Complex, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, M. Basler, R. Schwab, W. Heinemeyer, C. J. Kirk, M. Groettrup, M. Groll
Immuno- And Constitutive Proteasome Crystal Structures Reveal Differences In Substrate And Inhibitor Specificity.
Cell(Cambridge, Mass. ) V. 148 727 2012
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ca)
1b: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cb)
1c: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cc)
1d: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cd)
1e: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Ce)
1f: 1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MOR... (04Cf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
04C
6
Ligand/Ion
1,2,4-TRIDEOXY-4-METHYL-2-{[N-(MORPHOLIN-4-YLACETYL)-L-ALANYL-O-METHYL-L-TYROSYL]AMINO}-1-PHENYL-D-XYLITOL
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR H:1 , ARG H:19 , SER H:20 , THR H:21 , CYS H:31 , LYS H:33 , GLY H:45 , GLY H:47 , THR H:48 , ALA H:49 , THR H:52 , GLY H:168 , HOH H:442 , ASP I:124 , ILE I:126
BINDING SITE FOR RESIDUE 04C H 301
2
AC2
SOFTWARE
THR K:1 , ARG K:19 , ALA K:20 , THR K:21 , VAL K:31 , LYS K:33 , MET K:45 , GLY K:47 , ALA K:49 , TYR K:170 , HOH K:414 , ASP L:126 , VAL L:128
BINDING SITE FOR RESIDUE 04C K 301
3
AC3
SOFTWARE
HIS H:116 , HOH H:412 , THR N:1 , ARG N:19 , THR N:20 , THR N:21 , THR N:22 , LYS N:33 , ARG N:45 , GLY N:47 , ALA N:49 , THR N:94 , SER N:168 , HOH N:351
BINDING SITE FOR RESIDUE 04C N 201
4
AC4
SOFTWARE
THR V:1 , ARG V:19 , SER V:20 , THR V:21 , CYS V:31 , LYS V:33 , ALA V:46 , GLY V:47 , ALA V:49 , THR V:52 , SER V:129 , GLY V:168 , ASP W:124 , ILE W:126
BINDING SITE FOR RESIDUE 04C V 301
5
AC5
SOFTWARE
THR Y:1 , ARG Y:19 , ALA Y:20 , THR Y:21 , VAL Y:31 , MET Y:45 , GLY Y:47 , ALA Y:49 , SER Y:96 , TYR Y:170 , ASP Z:126
BINDING SITE FOR RESIDUE 04C Y 301
6
AC6
SOFTWARE
HIS V:116 , THR b:1 , ARG b:19 , THR b:20 , THR b:21 , LYS b:33 , ARG b:45 , GLY b:47 , SER b:48 , ALA b:49 , THR b:52 , THR b:94 , SER b:168 , HOH b:346
BINDING SITE FOR RESIDUE 04C b 201
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (J:1-184,X:1-184,I:8-189,W:8-189,L:...)
2: PROTEASOME_ALPHA_1 (C:2-24,Q:2-24,A:5-27,O:5-27,E:5-27...)
3: PROTEASOME_BETA_1 (J:5-52,X:5-52,I:12-58,W:12-58,N:4-...)
4: PROTEASOME_ALPHA_2 (C:17-231,Q:17-231,A:20-247,O:20-24...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
PSB4_YEAST
1-184
2
J:1-184
X:1-184
PSB3_YEAST
9-190
2
I:8-189
W:8-189
PSB6_YEAST
28-226
2
L:9-207
Z:9-207
PSB7_YEAST
41-233
2
M:8-200
a:8-200
2
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA4_YEAST
4-26
2
C:2-24
Q:2-24
PSA2_YEAST
5-27
2
A:5-27
O:5-27
PSA6_YEAST
6-28
2
E:5-27
S:5-27
PSA3_YEAST
6-28
2
B:5-27
P:5-27
PSA7_YEAST
8-30
2
F:4-26
T:4-26
PSA1_YEAST
12-34
2
G:3-25
U:3-25
3
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB4_YEAST
5-52
2
J:5-52
X:5-52
PSB3_YEAST
13-59
2
I:12-58
W:12-58
PSB1_YEAST
23-70
2
N:4-51
b:4-51
PSB6_YEAST
32-79
2
L:13-60
Z:13-60
PSB2_YEAST
33-80
2
H:4-51
V:4-51
PSB7_YEAST
45-92
2
M:12-59
a:12-59
PSB5_YEAST
79-126
2
K:4-51
Y:4-51
4
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA4_YEAST
19-233
2
C:17-231
Q:17-231
PSA2_YEAST
20-247
2
A:20-247
O:20-247
PSA6_YEAST
21-234
2
E:20-233
S:20-233
PSA3_YEAST
21-239
2
B:20-238
P:20-238
PSA5_YEAST
23-240
2
D:15-232
R:15-232
PSA7_YEAST
23-240
2
F:19-236
T:19-236
PSA1_YEAST
27-245
2
G:18-236
U:18-236
[
close PROSITE info
]
Exons
(15, 30)
Info
All Exons
Exon 1.1 (L:1-222 | Z:1-222)
Exon 2.1 (J:1-198 | X:1-198)
Exon 3.1 (I:1-204 | W:1-204)
Exon 4.1 (M:1-233 | a:1-233)
Exon 5.1 (G:1-243 | U:1-243)
Exon 6.1 (B:1-244 | P:1-244)
Exon 7.1 (D:1-242 | R:1-242)
Exon 8.1 (N:1-3 | b:1-3)
Exon 8.2 (N:3-196 | b:3-196)
Exon 9.1 (A:1-250 | O:1-250)
Exon 10.1 (E:1-233 | S:1-233)
Exon 11.1 (C:1-241 | Q:1-241)
Exon 12.1 (H:1-222 | V:1-222)
Exon 13.1 (F:1-244 | T:1-244)
Exon 14.1 (K:1-212 | Y:1-212)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/-
03: Boundary -/2.1
04: Boundary 2.1/-
05: Boundary -/3.1
06: Boundary 3.1/-
07: Boundary -/4.1
08: Boundary 4.1/-
09: Boundary -/5.1
10: Boundary 5.1/-
11: Boundary -/6.1
12: Boundary 6.1/-
13: Boundary -/7.1
14: Boundary 7.1/-
15: Boundary -/8.1
16: Boundary 8.1/8.2
17: Boundary 8.2/-
18: Boundary -/9.1
19: Boundary 9.1/-
20: Boundary -/10.1
21: Boundary 10.1/-
22: Boundary -/11.1
23: Boundary 11.1/-
24: Boundary -/12.1
25: Boundary 12.1/-
26: Boundary -/13.1
27: Boundary 13.1/-
28: Boundary -/14.1
29: Boundary 14.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBL041W
1
YBL041W.1
II:141250-141975
726
PSB6_YEAST
1-241
241
2
L:1-222
Z:1-222
222
222
2.1
YER012W
1
YER012W.1
V:177834-178430
597
PSB4_YEAST
1-198
198
2
J:1-198
X:1-198
198
198
3.1
YER094C
1
YER094C.1
V:349342-348725
618
PSB3_YEAST
1-205
205
2
I:1-204
W:1-204
204
204
4.1
YFR050C
1
YFR050C.1
VI:249853-249053
801
PSB7_YEAST
1-266
266
2
M:1-233
a:1-233
233
233
5.1
YGL011C
1
YGL011C.1
VII:475252-474494
759
PSA1_YEAST
1-252
252
2
G:1-243
U:1-243
243
243
6.1
YGR135W
1
YGR135W.1
VII:761397-762173
777
PSA3_YEAST
1-258
258
2
B:1-244
P:1-244
244
244
7.1
YGR253C
1
YGR253C.1
VII:999145-998363
783
PSA5_YEAST
1-260
260
2
D:1-242
R:1-242
242
242
8.1
YJL001W
1
YJL001W.1
X:435156-435220
65
PSB1_YEAST
1-22
22
2
N:1-3
b:1-3
3
3
8.2
YJL001W
2
YJL001W.2
X:435337-435919
583
PSB1_YEAST
22-215
194
2
N:3-196
b:3-196
194
194
9.1
YML092C
1
YML092C.1
XIII:86739-85987
753
PSA2_YEAST
1-250
250
2
A:1-250
O:1-250
250
250
10.1
YMR314W
1
YMR314W.1
XIII:901708-902412
705
PSA6_YEAST
1-234
234
2
E:1-233
S:1-233
233
233
11.1
YOL038W
1
YOL038W.1
XV:255336-256100
765
PSA4_YEAST
1-254
254
2
C:1-241
Q:1-241
241
241
12.1
YOR157C
1
YOR157C.1
XV:631752-630967
786
PSB2_YEAST
1-261
261
2
H:1-222
V:1-222
222
222
13.1
YOR362C
1
YOR362C.1
XV:1018744-1017878
867
PSA7_YEAST
1-288
288
2
F:1-244
T:1-244
244
244
14.1
YPR103W
1
YPR103W.1
XVI:732347-733210
864
PSB5_YEAST
1-287
287
2
K:1-212
Y:1-212
212
212
[
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]
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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