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3UMY
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217A TTHL1 IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS
Authors
:
A. G. Gabdulkhakov, N. A. Nevskaya, S. V. Nikonov
Date
:
15 Nov 11 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Ribosomal Protein, Rrna, Rrna Binding, Ribosome, Rrna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. V. Tishchenko, E. Y. Nikonova, O. S. Kostareva, A. G. Gabdulkhakov, A. V. Sarskikh, W. Piendl, S. V. Nikonov, M. B. Garber, N. A. Nevskaya
Crystal Structure Of Mutant Ribosomal Protein T217A Tthl1 I Complex With 80Nt 23S Rna From Thermus Thermophilus
To Be Published
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
NA
1
Ligand/Ion
SODIUM ION
4
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:211 , VAL A:212 , ARG A:223 , ILE A:224 , HOH A:441
BINDING SITE FOR RESIDUE CL A 301
02
AC2
SOFTWARE
PHE A:147
BINDING SITE FOR RESIDUE CL A 302
03
AC3
SOFTWARE
PRO A:1 , LYS A:2 , HIS A:3 , ARG A:52 , ARG A:53 , SER A:54 , HOH A:440
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
GLU A:42 , THR A:215 , THR A:216 , ALA A:217 , G B:2123 , C B:2175 , A B:2176
BINDING SITE FOR RESIDUE NA A 304
05
AC5
SOFTWARE
U B:2122 , G B:2123 , HOH B:2320 , HOH B:2323 , HOH B:2324 , HOH B:2328
BINDING SITE FOR RESIDUE MG B 2201
06
AC6
SOFTWARE
C B:2128 , C B:2129 , A B:2173 , C B:2174 , HOH B:2327
BINDING SITE FOR RESIDUE MG B 2202
07
AC7
SOFTWARE
G B:2155 , G B:2156 , G B:2157 , HOH B:2353 , HOH B:2357
BINDING SITE FOR RESIDUE MG B 2203
08
AC8
SOFTWARE
G B:2125 , HOH B:2371 , HOH B:2374 , HOH B:2375
BINDING SITE FOR RESIDUE MG B 2204
09
AC9
SOFTWARE
LYS A:184 , G B:2156 , HOH B:2381 , HOH B:2383
BINDING SITE FOR RESIDUE SO4 B 2205
10
BC1
SOFTWARE
C B:2178 , HOH B:2346 , HOH B:2393
BINDING SITE FOR RESIDUE SO4 B 2206
11
BC2
SOFTWARE
C B:2139 , C B:2140 , U B:2150 , G B:2151 , HOH B:2388
BINDING SITE FOR RESIDUE SO4 B 2207
12
BC3
SOFTWARE
G B:2133 , G B:2157
BINDING SITE FOR RESIDUE SO4 B 2208
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L1 (A:120-139)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L1
PS01199
Ribosomal protein L1 signature.
RL1_THETH
121-140
1
A:120-139
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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