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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3ULV
Asym. Unit
Info
Asym.Unit (329 KB)
Biol.Unit 1 (321 KB)
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(1)
Title
:
STRUCTURE OF QUATERNARY COMPLEX OF HUMAN TLR3ECD WITH THREE FABS (FORM2)
Authors
:
J. Luo, G. L. Gilliland, O. Obmolova, T. Malia, A. Teplyakov
Date
:
11 Nov 11 (Deposition) - 23 May 12 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.52
Chains
:
Asym. Unit : A,C,D,E,F,H,L
Biol. Unit 1: A,C,D,E,F,H,L (1x)
Keywords
:
Toll-Like Receptor-3, Tlr3, Innate Immunity, Leucine Rich Repeat, Lrr, Immunoglobulin, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, G. Obmolova, T. J. Malia, S. J. Wu, K. E. Duffy, J. D. Marion, J. K. Bell, P. Ge, Z. H. Zhou, A. Teplyakov, Y. Zhao, R. J. Lamb, J. L. Jordan, L. R. San Mateo, R. W. Sweet, G. L. Gilliland
Lateral Clustering Of Tlr3:Dsrna Signaling Units Revealed B Tlr3Ecd:3Fabs Quaternary Structure.
J. Mol. Biol. V. 421 112 2012
[
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:33 , ASN A:52
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
GLN A:44 , PRO A:67 , ASN A:70
BINDING SITE FOR RESIDUE NAG A 802
03
AC3
SOFTWARE
PRO A:99 , MET A:100 , ASN A:124
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
ALA A:246 , ASN A:247 , TRP A:273
BINDING SITE FOR RESIDUE NAG A 804
05
AC5
SOFTWARE
ASN A:252 , MET A:278
BINDING SITE FOR RESIDUE NAG A 805
06
AC6
SOFTWARE
ASN A:265 , TRP A:296 , NAG A:807
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
NAG A:806
BINDING SITE FOR RESIDUE NAG A 807
08
AC8
SOFTWARE
THR A:248 , TRP A:273 , ASN A:275
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
ASN A:291 , PHE A:314 , HIS A:316 , NAG A:810
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
NAG A:809
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
ASN A:398 , GLU A:399 , NAG A:812
BINDING SITE FOR RESIDUE NAG A 811
12
BC3
SOFTWARE
NAG A:811 , SO4 E:302
BINDING SITE FOR RESIDUE NAG A 812
13
BC4
SOFTWARE
SER A:387 , ASN A:413 , THR A:415 , LYS A:416 , ASP A:437 , NAG A:814
BINDING SITE FOR RESIDUE NAG A 813
14
BC5
SOFTWARE
NAG A:813 , BMA A:815
BINDING SITE FOR RESIDUE NAG A 814
15
BC6
SOFTWARE
NAG A:814 , MAN A:816
BINDING SITE FOR RESIDUE BMA A 815
16
BC7
SOFTWARE
BMA A:815
BINDING SITE FOR RESIDUE MAN A 816
17
BC8
SOFTWARE
PRO A:480 , SER A:481 , ASN A:507 , LYS A:531 , NAG A:818
BINDING SITE FOR RESIDUE NAG A 817
18
BC9
SOFTWARE
NAG A:817
BINDING SITE FOR RESIDUE NAG A 818
19
CC1
SOFTWARE
ARG A:488 , GLN A:538 , HIS A:539 , GLN L:27
BINDING SITE FOR RESIDUE SO4 A 819
20
CC2
SOFTWARE
TYR A:326 , HIS A:359 , ASN A:361
BINDING SITE FOR RESIDUE SO4 A 820
21
CC3
SOFTWARE
SER A:424 , ASN E:28 , HIS E:30
BINDING SITE FOR RESIDUE SO4 E 301
22
CC4
SOFTWARE
LEU A:393 , ARG A:394 , THR A:395
BINDING SITE FOR RESIDUE SO4 A 821
23
CC5
SOFTWARE
NAG A:812 , SER E:67 , GLY E:68
BINDING SITE FOR RESIDUE SO4 E 302
24
CC6
SOFTWARE
LYS A:163 , THR A:166 , GLU A:189 , ARG D:56 , TYR D:60 , ASN D:62
BINDING SITE FOR RESIDUE SO4 A 822
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052361 (N284I, chain A, )
2: VAR_052362 (Y307D, chain A, )
3: VAR_021976 (L412F, chain A, )
4: VAR_054887 (P554S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052361
N
284
I
TLR3_HUMAN
Polymorphism
5743316
A
N
284
I
2
UniProt
VAR_052362
Y
307
D
TLR3_HUMAN
Polymorphism
5743317
A
Y
307
D
3
UniProt
VAR_021976
L
412
F
TLR3_HUMAN
Polymorphism
3775291
A
L
412
F
4
UniProt
VAR_054887
P
554
S
TLR3_HUMAN
Disease (HSE2)
---
A
P
554
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 19)
Info
All PROSITE Patterns/Profiles
1: LRR (A:52-73|A:76-97|A:100-121|A:124-14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR3_HUMAN
52-73
76-97
100-121
124-145
148-168
172-193
198-219
249-270
275-296
299-320
356-377
380-400
408-429
432-454
507-528
531-552
563-584
587-608
611-632
19
A:52-73
A:76-97
A:100-121
A:124-145
A:148-168
A:172-193
A:198-219
A:249-270
A:275-296
A:299-320
A:356-377
A:380-400
A:408-429
A:432-454
A:507-528
A:531-552
A:563-584
A:587-608
A:611-632
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:29-147)
Exon 1.3 (A:148-211)
Exon 1.4f (A:212-696)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4f
4: Boundary 1.4f/1.5c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000296795
1a
ENSE00002039207
chr4:
186990306-186990402
97
TLR3_HUMAN
-
0
0
-
-
1.2
ENST00000296795
2
ENSE00001083670
chr4:
186997767-186998214
448
TLR3_HUMAN
1-147
147
1
A:29-147
119
1.3
ENST00000296795
3
ENSE00001083669
chr4:
186999994-187000185
192
TLR3_HUMAN
148-211
64
1
A:148-211
64
1.4f
ENST00000296795
4f
ENSE00001083667
chr4:
187003474-187005326
1853
TLR3_HUMAN
212-829
618
1
A:212-696
485
1.5c
ENST00000296795
5c
ENSE00001375046
chr4:
187005799-187006255
457
TLR3_HUMAN
829-904
76
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
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)
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Sidechain
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Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain D
Chain E
Chain F
Chain H
Chain L
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