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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3UL9
Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
STRUCTURE OF THE TV3 MUTANT M41E
Authors
:
H. J. Kim, H. K. Cheong, Y. H. Jeon
Date
:
10 Nov 11 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lrr, Protein Binding, Md-2, Extracellular Matrix, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Han, H. J. Kim, S. C. Lee, S. Hong, K. Park, Y. H. Jeon, D. Kim, H. K. Cheong, H. S. Kim
Structure-Based Rational Design Of A Toll-Like Receptor 4 (Tlr4) Decoy Receptor With High Binding Affinity For A Target Protein.
Plos One V. 7 30929 2012
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: 2,6-ANHYDRO-1-DEOXY-D-GALACTITOL (FU4a)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FU4
1
Ligand/Ion
2,6-ANHYDRO-1-DEOXY-D-GALACTITOL
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:137 , ASN A:173
BINDING SITE FOR RESIDUE NAG A 801
2
AC2
SOFTWARE
ASN A:35 , ASP A:60 , NAG A:803 , FU4 A:805
BINDING SITE FOR RESIDUE NAG A 802
3
AC3
SOFTWARE
NAG A:802 , BMA A:804 , FU4 A:805
BINDING SITE FOR RESIDUE NAG A 803
4
AC4
SOFTWARE
NAG A:803
BINDING SITE FOR RESIDUE BMA A 804
5
AC5
SOFTWARE
NAG A:802 , NAG A:803
BINDING SITE FOR RESIDUE FU4 A 805
6
AC6
SOFTWARE
HIS A:258 , THR A:259 , SER A:286 , LYS A:288
BINDING SITE FOR RESIDUE SO4 A 806
7
AC7
SOFTWARE
SER A:123 , GLY A:124 , HIS A:148
BINDING SITE FOR RESIDUE SO4 A 807
8
AC8
SOFTWARE
GLN A:188 , SER A:189 , TYR A:191
BINDING SITE FOR RESIDUE SO4 A 808
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021977 (T175A, chain A, )
2: VAR_018729 (Q188R, chain A, )
3: VAR_018733 (Q253K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021977
T
175
A
TLR4_HUMAN
Polymorphism
16906079
A
T
175
A
2
UniProt
VAR_018729
Q
188
R
TLR4_HUMAN
Polymorphism
5030713
A
Q
188
R
3
UniProt
VAR_018733
E
474
K
TLR4_HUMAN
Polymorphism
5030718
A
Q
253
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 7)
Info
All PROSITE Patterns/Profiles
1: LRR (A:55-76|A:79-100|A:103-124|A:176-1...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR4_HUMAN
55-76
79-100
103-124
176-199
151-172
374-394
400-422
423-444
497-518
521-542
545-565
7
A:55-76
A:79-100
A:103-124
A:176-199
A:151-172
-
-
-
-
A:261-264
A:265-281
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Exons
(3, 3)
Info
All Exons
Exon 1.1b (A:28-31)
Exon 1.3a (A:32-87)
Exon 1.4c (A:87-303 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.3a
3: Boundary 1.3a/1.4c
4: Boundary 1.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000355622
1b
ENSE00001946124
chr9:
120466650-120466843
194
TLR4_HUMAN
1-31
31
1
A:28-31
4
1.3a
ENST00000355622
3a
ENSE00001654637
chr9:
120470841-120471007
167
TLR4_HUMAN
32-87
56
1
A:32-87
56
1.4c
ENST00000355622
4c
ENSE00001462052
chr9:
120474667-120479149
4483
TLR4_HUMAN
87-839
753
1
A:87-303 (gaps)
543
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
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Chain A
Asymmetric Unit 1
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