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3UK3
Asym. Unit
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Asym.Unit (81 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA
Authors
:
M. S. Vandevenne, D. A. Jacques, J. M. Guss, J. P. Mackay
Date
:
08 Nov 11 (Deposition) - 05 Dec 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Zinc Finger, Transcription Factor, Dna Binding, Dna-Metal Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Vandevenne, D. A. Jacques, J. M. Guss, J. P. Mackay
Rediscovering Dna Recognition By Classical Zinc Fingers.
To Be Published
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
ZN
8
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:501 , CYS C:504 , HIS C:517 , HIS C:522
BINDING SITE FOR RESIDUE ZN C 967
2
AC2
SOFTWARE
CYS C:473 , CYS C:476 , HIS C:489 , HIS C:493
BINDING SITE FOR RESIDUE ZN C 968
3
AC3
SOFTWARE
CYS D:501 , CYS D:504 , HIS D:517 , HIS D:522
BINDING SITE FOR RESIDUE ZN D 967
4
AC4
SOFTWARE
CYS D:473 , CYS D:476 , HIS D:489 , HIS D:493
BINDING SITE FOR RESIDUE ZN D 968
5
AC5
SOFTWARE
DA A:13 , HIS C:521
BINDING SITE FOR RESIDUE ZN C 1
6
AC6
SOFTWARE
DG B:12 , HOH B:51
BINDING SITE FOR RESIDUE ZN B 21
7
AC7
SOFTWARE
GLU C:502 , GLU D:472 , GLY D:477 , HIS D:521
BINDING SITE FOR RESIDUE ZN D 1
8
AC8
SOFTWARE
DT B:17 , HOH B:53 , HOH D:50
BINDING SITE FOR RESIDUE ZN B 22
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (-|-|-|-|-|C:473-493,D:473-493)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
ZN217_HUMAN
67-88
130-150
158-178
218-238
377-397
473-493
2
-
-
-
-
-
C:473-493
D:473-493
[
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Exons
(2, 4)
Info
All Exons
Exon 1.6 (C:471-495 | D:470-495)
Exon 1.7a (C:495-522 | D:495-523)
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All Exon Boundaries
1: Boundary 1.5b/1.6
2: Boundary 1.6/1.7a
3: Boundary 1.7a/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000371471
4
ENSE00001523402
chr20:
52210378-52210295
84
ZN217_HUMAN
-
0
0
-
-
1.5b
ENST00000371471
5b
ENSE00002162750
chr20:
52199707-52198000
1708
ZN217_HUMAN
1-456
456
0
-
-
1.6
ENST00000371471
6
ENSE00001722637
chr20:
52194989-52194873
117
ZN217_HUMAN
456-495
40
2
C:471-495
D:470-495
25
26
1.7a
ENST00000371471
7a
ENSE00001742197
chr20:
52193819-52192266
1554
ZN217_HUMAN
495-1013
519
2
C:495-522
D:495-523
28
29
1.8
ENST00000371471
8
ENSE00001143007
chr20:
52188392-52188260
133
ZN217_HUMAN
1013-1048
36
0
-
-
1.9d
ENST00000371471
9d
ENSE00001455296
chr20:
52185803-52183604
2200
ZN217_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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