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3UJJ
Biol. Unit 1
Info
Asym.Unit (93 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 4025 IN COMPLEX WITH CON A PEPTIDE
Authors
:
X. P. Kong, J. Sampson
Date
:
07 Nov 11 (Deposition) - 28 Dec 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : H,L,P
Biol. Unit 1: H,L,P (1x)
Keywords
:
Ig Domains, Antibody Fab, Antigen Binding, The Third Variable Region Of Hiv-1 Gp120, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Gorny, J. Sampson, H. Li, X. Jiang, M. Totrov, X. H. Wang, C. Williams, T. O'Neal, B. Volsky, L. Li, T. Cardozo, P. Nyambi, S. Zolla-Pazner, X. P. Kong
Human Anti-V3 Hiv-1 Monoclonal Antibodies Encoded By The Vh5-51/Vl Lambda Genes Define A Conserved Antigenic Structure.
Plos One V. 6 27780 2011
[
close entry info
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Hetero Components
(3, 34)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
GOL
19
Ligand/Ion
GLYCEROL
3
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR L:2 , ASN L:92 , SER L:93 , GLY L:94 , HOH L:427
BINDING SITE FOR RESIDUE GOL L 212
02
AC2
SOFTWARE
GLN L:37 , VAL L:45 , PRO L:59 , HOH L:271 , HOH L:302 , HOH L:364 , HOH L:397
BINDING SITE FOR RESIDUE GOL L 213
03
AC3
SOFTWARE
ALA H:100 , TYR L:49 , ARG L:54 , PRO L:55 , SER L:56 , HOH L:252 , HOH L:333 , HOH L:350
BINDING SITE FOR RESIDUE GOL L 214
04
AC4
SOFTWARE
THR L:205 , ACT L:228 , HOH L:386 , THR P:303
BINDING SITE FOR RESIDUE GOL L 215
05
AC5
SOFTWARE
TYR H:91 , GLN L:38 , LYS L:39 , GLY L:41 , GLN L:42 , HOH L:308 , HOH L:327 , HOH L:349
BINDING SITE FOR RESIDUE GOL L 216
06
AC6
SOFTWARE
HOH H:339 , SER L:121 , SER L:122 , HOH L:372
BINDING SITE FOR RESIDUE GOL L 217
07
AC7
SOFTWARE
SER L:52 , LYS L:53 , ARG L:54 , SO4 L:224 , SO4 L:225 , HOH L:304 , HOH L:435 , HOH L:468
BINDING SITE FOR RESIDUE GOL L 218
08
AC8
SOFTWARE
HOH H:307 , HOH H:325 , GLN L:42 , ALA L:43 , VAL L:45 , HOH L:283 , HOH L:417
BINDING SITE FOR RESIDUE GOL L 219
09
AC9
SOFTWARE
HIS H:164 , GLN L:167 , SER L:168 , HOH L:341 , HOH L:464
BINDING SITE FOR RESIDUE SO4 L 220
10
BC1
SOFTWARE
PRO L:59 , ARG L:61 , GLN L:79 , ASP L:81 , HOH L:271
BINDING SITE FOR RESIDUE SO4 L 221
11
BC2
SOFTWARE
SER L:40 , GLU L:83 , LYS L:103 , TYR L:172 , HOH L:359
BINDING SITE FOR RESIDUE SO4 L 222
12
BC3
SOFTWARE
PRO L:154 , VAL L:155 , LYS L:156 , ALA L:157
BINDING SITE FOR RESIDUE SO4 L 223
13
BC4
SOFTWARE
ARG L:54 , SER L:63 , GOL L:218 , HOH L:249 , HOH L:276
BINDING SITE FOR RESIDUE SO4 L 224
14
BC5
SOFTWARE
LYS L:53 , LYS L:186 , ARG L:189 , GOL L:218 , HOH L:435 , HOH L:468
BINDING SITE FOR RESIDUE SO4 L 225
15
BC6
SOFTWARE
THR L:18 , ARG L:20 , HOH L:434
BINDING SITE FOR RESIDUE ACT L 226
16
BC7
SOFTWARE
ASN L:112 , THR L:114 , VAL L:115 , LYS L:204
BINDING SITE FOR RESIDUE ACT L 227
17
BC8
SOFTWARE
GLU L:198 , GLY L:199 , GLU L:203 , THR L:205 , GOL L:215 , HOH L:474 , ACT P:2
BINDING SITE FOR RESIDUE ACT L 228
18
BC9
SOFTWARE
ALA H:125 , SER H:127 , ALA H:137 , LYS H:214 , HOH H:372 , HOH H:412 , LEU L:117 , PHE L:118 , PRO L:119
BINDING SITE FOR RESIDUE GOL H 220
19
CC1
SOFTWARE
SER H:55 , ASP H:56 , THR H:57 , HOH H:247 , THR L:5 , GLN L:6 , THR L:100
BINDING SITE FOR RESIDUE GOL H 221
20
CC2
SOFTWARE
SER H:130 , THR H:131 , SER H:132 , GLY H:133 , SER H:186 , SER H:187 , ACT H:233 , HOH H:426
BINDING SITE FOR RESIDUE GOL H 222
21
CC3
SOFTWARE
GLY H:65 , GLN H:66 , GLY H:67 , TRP H:82 , SER H:82A , SER H:82B , HOH H:368 , HOH H:443
BINDING SITE FOR RESIDUE GOL H 223
22
CC4
SOFTWARE
MET H:40 , LYS H:43 , GLY H:44 , GLU H:46 , HOH H:239 , HOH L:438
BINDING SITE FOR RESIDUE GOL H 224
23
CC5
SOFTWARE
LYS H:117 , SER H:120 , ASP H:144 , HOH H:405 , LYS L:129 , HOH L:313
BINDING SITE FOR RESIDUE GOL H 225
24
CC6
SOFTWARE
TYR H:27 , SER H:28 , PHE H:29 , SER H:30 , HOH H:323
BINDING SITE FOR RESIDUE GOL H 226
25
CC7
SOFTWARE
GLY H:118 , SER H:120 , VAL H:121 , PHE H:122 , THR H:205 , VAL H:207 , LYS H:209 , HOH H:248 , HOH H:329 , GLU L:123
BINDING SITE FOR RESIDUE GOL H 227
26
CC8
SOFTWARE
LYS H:83 , ALA H:84 , SER H:85 , HOH H:343 , HOH H:373 , HOH H:479
BINDING SITE FOR RESIDUE GOL H 228
27
CC9
SOFTWARE
PRO H:41 , LEU H:170 , TYR H:176 , HOH H:319 , HOH H:370 , HOH H:480
BINDING SITE FOR RESIDUE GOL H 229
28
DC1
SOFTWARE
ARG H:38 , SER H:62 , PHE H:63 , GLN H:66 , LYS H:83 , HOH H:299 , HOH H:333
BINDING SITE FOR RESIDUE GOL H 230
29
DC2
SOFTWARE
GLN H:171 , SER H:172 , HOH H:237 , HOH H:298 , HOH H:300 , HOH H:303 , GLY L:158 , GLU L:160 , SER L:179
BINDING SITE FOR RESIDUE SO4 H 231
30
DC3
SOFTWARE
TYR H:27 , SER H:28 , TYR H:32 , HOH H:377 , ARG P:304
BINDING SITE FOR RESIDUE SO4 H 232
31
DC4
SOFTWARE
SER H:127 , SER H:128 , LYS H:129 , SER H:186 , LEU H:189 , THR H:219 , GOL H:222
BINDING SITE FOR RESIDUE ACT H 233
32
DC5
SOFTWARE
SER H:30 , LYS H:73
BINDING SITE FOR RESIDUE ACT H 234
33
DC6
SOFTWARE
GLY H:26 , HOH H:421
BINDING SITE FOR RESIDUE ACT H 235
34
DC7
SOFTWARE
ACT L:228 , THR P:303 , HOH P:414
BINDING SITE FOR RESIDUE ACT P 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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)
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Protein & NOT Site
Protein & NOT PROSITE
Chain H
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Asymmetric Unit 1
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